Factsheet for VIT_09s0002g09120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
golgi 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	22.29	88.64
VIT_09s0002g09140.t01	Wine grape	nucleus	86.86	85.88
GSMUA_Achr7P19320_001	Banana	nucleus	57.14	65.36
VIT_04s0008g06000.t01	Wine grape	mitochondrion	65.14	60.96
GSMUA_Achr5P22840_001	Banana	mitochondrion, nucleus	55.43	60.25
Zm00001d052026_P001	Maize	mitochondrion	50.29	57.14
OQU85888	Sorghum	mitochondrion	50.29	56.77
GSMUA_Achr10P...	Banana	mitochondrion	56.57	56.25
KRH05258	Soybean	nucleus	63.43	54.95
KRH15790	Soybean	nucleus	61.71	54.27
TraesCS6A01G360300.1	Wheat	mitochondrion	51.43	54.22
TraesCS6B01G393200.1	Wheat	mitochondrion	52.0	53.53
TraesCS6D01G343800.1	Wheat	mitochondrion	52.0	53.53
Os02t0797100-00	Rice	mitochondrion	51.43	52.33
TraesCS7D01G147200.1	Wheat	mitochondrion, nucleus	48.57	52.15
TraesCS7B01G048100.1	Wheat	mitochondrion	48.0	51.85
TraesCS7D01G147100.1	Wheat	mitochondrion, nucleus	48.57	51.83
TraesCS7A01G145800.1	Wheat	mitochondrion, nucleus	49.14	51.81
Zm00001d035835_P001	Maize	mitochondrion	50.86	51.45
Zm00001d045120_P001	Maize	mitochondrion	49.14	50.89
Os06t0181700-01	Rice	mitochondrion	51.43	50.56
EER87969	Sorghum	mitochondrion	49.71	48.07
VIT_07s0031g00420.t01	Wine grape	nucleus	25.14	45.83
GSMUA_Achr7P16060_001	Banana	mitochondrion	55.43	41.1
VIT_09s0002g06750.t01	Wine grape	mitochondrion	38.86	36.76
VIT_04s0008g05440.t01	Wine grape	nucleus	37.71	34.02
VIT_11s0016g05340.t01	Wine grape	nucleus	38.86	33.33
HORVU7Hr1G029870.1	Barley	mitochondrion	26.86	19.83
VIT_00s0662g00030.t01	Wine grape	nucleus	22.86	17.47
VIT_02s0025g01360.t01	Wine grape	nucleus	25.14	16.67
VIT_18s0001g05250.t01	Wine grape	nucleus	30.29	14.44
VIT_00s0662g00040.t01	Wine grape	nucleus	30.86	14.44
VIT_05s0029g00140.t01	Wine grape	nucleus	26.29	11.39
VIT_12s0059g00280.t01	Wine grape	nucleus	29.71	11.18
VIT_19s0014g03180.t01	Wine grape	nucleus	24.57	10.67

Protein Annotations

EntrezGene:100261023	wikigene:100261023	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CBI36483	ProteinID:CBI36483.3	UniProt:D7TZG9	InterPro:DNA-bd_dom_sf	EMBL:FN596494
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EntrezGene:LOC100261023	wikigene:LOC100261023	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31194	PANTHER:PTHR31194:SF4	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC58568	UniParc:UPI00015CC417
ArrayExpress:VIT_09s0002g09120	EnsemblPlantsGene:VIT_09s0002g09120	EnsemblPlants:VIT_09s0002g09120.t01	unigene:Vvi.14968	RefSeq:XP_002274216	RefSeq:XP_002274216.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:10752791..10753553

Molecular Weight (calculated)

19792.2 Da

IEP (calculated)

9.125

GRAVY (calculated)

-0.834

Length

175 amino acids

Sequence
(BLAST)

001: MAGKQQQRYR GVRQRHWGSW VSEIRHPLLK TRIWLGTFET AEDAARAYDE AARLMCGPRA RTNFSYNPND SQSSSSRLLS ATLTAKLHRC YMASLQAAKE
101: PLATHLQQPH YSPNFATDGN AGNSRQVDVG SPAKRRRQVQ GKRVGGEDEE FKVLEDDHIE QMIEELLHSG SVELN

Best Arabidopsis Sequence Match ( AT5G25190.1 )
(BLAST)

001: MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR TNFPYNPNAI PTSSSKLLSA TLTAKLHKCY MASLQMTKQT
101: QTQTQTQTAR SQSADSDGVT ANESHLNRGV TETTEIKWED GNANMQQNFR PLEEDHIEQM IEELLHYGSI ELCSVLPTQT L

Arabidopsis Description

ERF003Ethylene-responsive transcription factor ERF003 [Source:UniProtKB/Swiss-Prot;Acc:Q94AW5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.