Factsheet for VIT_09s0002g06750.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0043g00510.t01	Wine grape	mitochondrion, nucleus	16.76	70.45
KRH09737	Soybean	nucleus	60.54	63.64
Os02t0202000-01	Rice	nucleus	63.78	57.56
VIT_04s0008g05440.t01	Wine grape	nucleus	59.46	56.7
PGSC0003DMT400007494	Potato	nucleus	61.62	56.44
TraesCS6A01G181400.2	Wheat	nucleus	62.7	56.04
TraesCS6B01G210300.1	Wheat	nucleus	62.7	56.04
VIT_11s0016g05340.t01	Wine grape	nucleus	61.62	55.88
HORVU6Hr1G038120.3	Barley	nucleus	62.16	55.83
Zm00001d015759_P001	Maize	nucleus	63.78	55.4
GSMUA_Achr9P28540_001	Banana	mitochondrion, nucleus	59.46	55.28
GSMUA_Achr7P10160_001	Banana	nucleus	60.54	54.37
KXG29745	Sorghum	nucleus	62.16	53.99
Solyc12g009490.1.1	Tomato	nucleus	62.16	51.8
VIT_07s0031g00420.t01	Wine grape	nucleus	22.7	43.75
VIT_04s0008g06000.t01	Wine grape	mitochondrion	39.46	39.04
VIT_09s0002g09120.t01	Wine grape	nucleus	36.76	38.86
VIT_09s0002g09140.t01	Wine grape	nucleus	35.68	37.29
VIT_02s0025g01360.t01	Wine grape	nucleus	28.65	20.08
VIT_00s0662g00030.t01	Wine grape	nucleus	22.7	18.34
VIT_18s0001g05250.t01	Wine grape	nucleus	29.73	14.99
VIT_00s0662g00040.t01	Wine grape	nucleus	29.73	14.71
VIT_05s0029g00140.t01	Wine grape	nucleus	27.03	12.38
VIT_19s0014g03180.t01	Wine grape	nucleus	25.95	11.91
VIT_12s0059g00280.t01	Wine grape	nucleus	27.03	10.75

Protein Annotations

MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CBI36313	ProteinID:CBI36313.3	UniProt:D7U117	InterPro:DNA-bd_dom_sf	EMBL:FN596494	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194
PANTHER:PTHR31194:SF12	SMART:SM00380	SUPFAM:SSF54171	TMHMM:TMhelix	UniParc:UPI0001BE4AB9	ArrayExpress:VIT_09s0002g06750
EnsemblPlantsGene:VIT_09s0002g06750	EnsemblPlants:VIT_09s0002g06750.t01	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:6657638..6658809

Molecular Weight (calculated)

20627.6 Da

IEP (calculated)

9.048

GRAVY (calculated)

-0.293

Length

185 amino acids

Sequence
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VMMSGRNAKT NFPTAVNHAN NEESSSSSPT ALSAILSAKL RKCCKSPSPS
101: LTCLRLDTEN SNIGVWQKRA GTRSDSNWVM TVELGKKNEQ AAEAGAEAEE FKINELGFIN FVSLCVFVWG VSILNYTLCS KILEL

Best Arabidopsis Sequence Match ( AT1G15360.2 )
(BLAST)

001: MVQTKKFRGV RQRHWGSWVA EIRHPLLKRR IWLGTFETAE EAARAYDEAA VLMSGRNAKT NFPLNNNNTG ETSEGKTDIS ASSTMSSSTS SSSLSSILSA
101: KLRKCCKSPS PSLTCLRLDT ASSHIGVWQK RAGSKSDSSW VMTVELGPAS SSQETTSKAS QDAILAPTTE VEIGGSREEV LDEEEKVALQ MIEELLNTN

Arabidopsis Description

WIN1Ethylene-responsive transcription factor WIN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.