Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68539 | Canola | mitochondrion, nucleus | 89.42 | 90.86 |
| CDX69779 | Canola | nucleus | 88.89 | 89.84 |
| Bra008985.1-P | Field mustard | nucleus | 88.89 | 89.84 |
| Solyc06g053240.2.1 | Tomato | nucleus | 13.76 | 83.87 |
| AT5G25390.2 | Thale cress | nucleus | 66.14 | 66.14 |
| VIT_04s0008g05440.t01 | Wine grape | nucleus | 62.43 | 60.82 |
| AT1G15360.1 | Thale cress | nucleus | 56.08 | 53.27 |
| KRH05157 | Soybean | nucleus | 55.56 | 52.76 |
| PGSC0003DMT400077702 | Potato | nucleus | 52.91 | 49.51 |
| AT5G25190.1 | Thale cress | mitochondrion | 35.45 | 37.02 |
| AT2G22200.1 | Thale cress | plastid | 27.51 | 19.92 |
| AT1G22190.1 | Thale cress | nucleus | 25.4 | 18.39 |
| AT5G65130.2 | Thale cress | nucleus | 26.45 | 17.92 |
| AT4G39780.1 | Thale cress | nucleus | 24.34 | 16.91 |
| AT1G78080.1 | Thale cress | nucleus | 28.57 | 16.17 |
| AT1G36060.1 | Thale cress | nucleus | 25.4 | 15.29 |
| AT1G64380.1 | Thale cress | nucleus | 26.98 | 15.22 |
| AT4G28140.1 | Thale cress | nucleus | 21.16 | 13.7 |
| AT2G20880.1 | Thale cress | nucleus | 22.22 | 12.5 |
| AT4G13620.1 | Thale cress | nucleus | 24.87 | 12.11 |
Protein Annotations
| MapMan:15.5.7.1 | MapMan:21.9.3.1 | Gene3D:3.30.730.10 | EntrezGene:830989 | ProteinID:AED91644.1 | InterPro:AP2/ERF-transcript_factor |
| InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ArrayExpress:AT5G11190 | EnsemblPlantsGene:AT5G11190 | RefSeq:AT5G11190 | TAIR:AT5G11190 |
| RefSeq:AT5G11190-TAIR-G | EnsemblPlants:AT5G11190.1 | TAIR:AT5G11190.1 | EMBL:AY560865 | ProteinID:CAB96654.1 | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009873 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_196680.1 | PFAM:PF00847 |
| PIRSF:PIRSF038123 | PO:PO:0000293 | PO:PO:0004707 | PO:PO:0005011 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31194 | PANTHER:PTHR31194:SF13 | UniProt:Q9LFN7 | Symbol:SHN3 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI00000A1975 | SEG:seg | : | : | : | : |
Description
SHN2Ethylene-responsive transcription factor SHINE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN7]
Coordinates
chr5:+:3564824..3566260
Molecular Weight (calculated)
21410.5 Da
IEP (calculated)
6.139
GRAVY (calculated)
-0.556
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA LLMNGQNAKT NFPVVKSEEG SDHVKDVNSP LMSPKSLSEL LNAKLRKSCK
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PTWVMRLELG NVVNESAVDL GLTTMNKQNV EKEEEEEEAI ISDEDQLAME MIEELLNWS
101: DLTPSLTCLR LDTDSSHIGV WQKRAGSKTS PTWVMRLELG NVVNESAVDL GLTTMNKQNV EKEEEEEEAI ISDEDQLAME MIEELLNWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.