Factsheet for Solyc12g013660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039593	Potato	nucleus	18.13	88.89
PGSC0003DMT400039576	Potato	nucleus	88.39	88.39
PGSC0003DMT400091991	Potato	nucleus	83.85	87.06
Solyc06g053240.2.1	Tomato	nucleus	4.53	51.61
VIT_00s0662g00030.t01	Wine grape	nucleus	17.28	26.64
Solyc03g117130.2.1	Tomato	mitochondrion, nucleus	11.33	24.69
Solyc07g054220.1.1	Tomato	nucleus	25.78	23.33
Solyc06g068360.2.1	Tomato	mitochondrion, nucleus	11.61	22.65
Solyc04g072900.1.1	Tomato	nucleus	16.43	21.97
Solyc04g054910.2.1	Tomato	nucleus	16.43	20.86
Solyc12g056980.1.1	Tomato	nucleus	17.85	20.52
Solyc08g082210.2.1	Tomato	nucleus	15.3	20.45
Solyc06g065820.2.1	Tomato	mitochondrion	11.61	20.1
Solyc03g116610.2.1	Tomato	nucleus	11.05	19.31
Solyc12g009490.1.1	Tomato	nucleus	10.76	17.12
Solyc09g091950.1.1	Tomato	extracellular, nucleus	15.58	13.13

Protein Annotations

MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4DCQ1
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF9	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g013660.1	EnsemblPlants:Solyc12g013660.1.1	UniParc:UPI000276A4AC	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:4505048..4506109

Molecular Weight (calculated)

40583.6 Da

IEP (calculated)

8.677

GRAVY (calculated)

-0.691

Length

353 amino acids

Sequence
(BLAST)

001: MKNIESIDNL QSIMSMYRPL KKLKISSSSQ HNSLRSSGDG VEPVAQRIRA RGYEPQFRFP FALDDPPLSS CHINWQSLTQ NQTMISFAPQ SWFNQCRIID
101: NGTRTTSMMN VYGTVSSPAS KRYRGVRQRH WGKWVAEIRL PRKRTRLWLG TFESAEEAAF AYDVEAFRLR GTDARLNFPH LFLGDLAPFD NNINVTNSAS
201: PSTTSFAKNP FQIQHNKRFI RQCRNKKIVP SAVEQSTSVF DKEIMMQDKA AYNKPLWYDP SQDSVHNESL VHETSQTMMF DGSDFYEPTP KYTNNIQQEN
301: SDMWKNVLQP TPFGNYSICT DDNLQQQKQQ CDFTITDPGF GDNVFDFSSK LLG

Best Arabidopsis Sequence Match ( AT2G20880.1 )
(BLAST)

001: MATAKNKGKS IRVLGTSEAE KKDEMELEEE FQFSSGKYKD SGPGSDMWLG DASSTSPRSL RKTRTFDRHN PYLVSSYATP QPPTTTTCSV SFPFYLPPAI
101: QNQQRFLHPN DPSGQRQQQM ISFDPQQQVQ PYVAQQQQQQ QHLLQYWRDI LKLSPSGRMM MMNMLRQESD LPLTRPPVQP FSATKLYRGV RQRHWGKWVA
201: EIRKPRNRTR LWLGTFDTAE EAAMAYDREA FKLRGETARL NFPELFLNKQ EPTPVHQKQC ETGTTSEDSS RRGEDDSSTA LAVGGVSEET GWAEAWFNAI
301: PEEWGPGSPL WDDYHFPISN HKDDLDATQN SSSDTI

Arabidopsis Description

ERF053Ethylene-responsive transcription factor ERF053 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.