Factsheet for PGSC0003DMT400031685

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g082210.2.1	Tomato	nucleus	81.97	91.29
PGSC0003DMT400014953	Potato	nucleus	67.01	63.14
VIT_02s0025g01360.t01	Wine grape	nucleus	50.0	55.68
PGSC0003DMT400039593	Potato	nucleus	12.24	50.0
Bra027697.1-P	Field mustard	nucleus	51.02	48.54
Bra027736.1-P	Field mustard	nucleus	50.34	48.52
AT1G64380.1	Thale cress	nucleus	52.72	46.27
GSMUA_Achr5P09470_001	Banana	nucleus	38.78	45.6
GSMUA_Achr1P27990_001	Banana	nucleus	34.69	41.13
Os05t0572000-00	Rice	nucleus	38.1	41.03
Zm00001d009622_P001	Maize	plastid	36.39	40.68
Zm00001d039077_P001	Maize	plastid	37.07	37.98
TraesCS1A01G411100.1	Wheat	plastid	36.05	37.19
TraesCS1B01G441300.1	Wheat	plastid	35.37	36.88
EES19973	Sorghum	plastid	37.76	36.76
TraesCS1D01G418900.1	Wheat	plastid	35.37	36.75
HORVU1Hr1G090250.1	Barley	plastid	35.03	34.8
PGSC0003DMT400036634	Potato	mitochondrion, nucleus	16.67	30.82
PGSC0003DMT400036817	Potato	mitochondrion, nucleus	16.67	30.82
PGSC0003DMT400080372	Potato	nucleus	23.13	26.36
PGSC0003DMT400001703	Potato	nucleus	18.37	26.21
PGSC0003DMT400007494	Potato	nucleus	17.35	25.25
PGSC0003DMT400022023	Potato	nucleus	28.57	24.78
PGSC0003DMT400073334	Potato	mitochondrion	15.31	24.73
PGSC0003DMT400067218	Potato	mitochondrion	15.99	23.98
PGSC0003DMT400024508	Potato	nucleus	29.93	23.98
PGSC0003DMT400077702	Potato	nucleus	16.33	23.76
PGSC0003DMT400053152	Potato	nucleus	27.55	21.89
PGSC0003DMT400091991	Potato	nucleus	19.05	16.47
PGSC0003DMT400047265	Potato	nucleus	21.77	16.45
PGSC0003DMT400039576	Potato	nucleus	19.05	15.86

Protein Annotations

EntrezGene:102590166	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1AW16	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400012154	PGSC:PGSC0003DMG400012154	EnsemblPlants:PGSC0003DMT400031685	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31657	PANTHER:PTHR31657:SF20	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002961C86
RefSeq:XP_006343866.1	SEG:seg	:	:	:	:

Description

AP2 domain-containing transcription factor 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400012154]

Coordinates

chr8:-:55811904..55813335

Molecular Weight (calculated)

33458.5 Da

IEP (calculated)

8.942

GRAVY (calculated)

-0.680

Length

294 amino acids

Sequence
(BLAST)

001: MDRNQENNSM TTIFDEAARI RSSLSQLILT SGTNTFDTIF SHCQENNQMT NSPVFEPLGT SVYLRQRDLL HKFCQENIAN IPIPTTSKTI PFRNSLYTQS
101: YKFPEKKKLY RGVRQRHWGK WVAEIRLPQN RMRVWLGTYE TAEAAAYAYD RAAYKLRGEY ARLNFPNLRD PSKLGFGDGE KMNAVKNAVD AKIQAICQKV
201: KREKSKKAAK KKSENESKVK ETMDSSSSTT TTTTTTSMIS PSVSEDGLWK SEDSTCSVFG DCLKDPLMES EFDSCSLARM PSFDPELIWE VLAN

Best Arabidopsis Sequence Match ( AT1G64380.1 )
(BLAST)

001: MEESNDIFQN NFSPKISEIR ASLSQIILAG GPNTLDSIFS LLTPSSVESA TTSFNTHNPP PPPQLGSSVY LRQRDIIEKF HLQNRAISTP HPPLFSSTYD
101: HHQTSELMLQ AAAGSPAAAF AAALAAGRVT KKKKLYRGVR QRHWGKWVAE IRLPQNRMRV WLGTYDTAEA AAYAYDRAAY KLRGEYARLN FPNLKDPSEL
201: LGLGDSSKLI ALKNAVDGKI QSICQRVRKE RAKKSVKVSK NSSATADSSC LSSPEILSSS PVTTTTTAVT SEDSYWVSPM GLCNSENSSP VSVSVPSEVP
301: ATAEEEAMMG VDTDGFLLAR MPSFDPELIW EVLAN

Arabidopsis Description

ERF061Ethylene-responsive transcription factor ERF061 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.