CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61776	Soybean	nucleus	92.43	89.06
Solyc06g053240.2.1	Tomato	nucleus	14.59	87.1
KRH05157	Soybean	nucleus	71.89	66.83
VIT_04s0008g05440.t01	Wine grape	nucleus	69.73	66.49
KRH09737	Soybean	nucleus	58.38	61.36
KRH47461	Soybean	nucleus	61.08	59.79
KRH44444	Soybean	nucleus	61.62	57.0
PGSC0003DMT400077702	Potato	nucleus	60.0	54.95
KRH62994	Soybean	nucleus	61.08	51.83
KRH54960	Soybean	nucleus	61.08	51.6
KRH20262	Soybean	nucleus	62.16	48.32
KRH03696	Soybean	nucleus	62.16	48.12
KRH09667	Soybean	mitochondrion, nucleus	36.22	37.64
KRH61698	Soybean	mitochondrion, nucleus	38.38	36.79
KRH52366	Soybean	mitochondrion, nucleus	38.38	36.6
KRH12836	Soybean	nucleus	24.86	36.22
KRH47384	Soybean	mitochondrion, nucleus	37.84	36.08
KRH44522	Soybean	mitochondrion	37.84	35.9
KRH15790	Soybean	nucleus	38.38	35.68
KRH05258	Soybean	nucleus	38.92	35.64
KRH23632	Soybean	nucleus	35.68	29.2
KRH53092	Soybean	nucleus	28.65	17.55
KRH77640	Soybean	nucleus	28.65	16.88
KRH16699	Soybean	nucleus	28.11	16.67
KRH62373	Soybean	nucleus	28.11	16.56
KRH31278	Soybean	nucleus	28.11	16.35
KRH43213	Soybean	nucleus	27.57	16.35
KRH59367	Soybean	nucleus	27.57	16.35
KRG97594	Soybean	nucleus	27.03	16.18
KRH18890	Soybean	nucleus	27.03	16.08
KRH27850	Soybean	nucleus	28.11	16.0
KRH34596	Soybean	nucleus	24.32	11.63
KRH55997	Soybean	nucleus	23.24	10.67
KRH25541	Soybean	nucleus	23.24	10.57
KRG92191	Soybean	nucleus	23.24	10.54
KRH26929	Soybean	nucleus	23.78	10.43
KRH22409	Soybean	nucleus	23.24	10.26

Protein Annotations

EntrezGene:100794649	MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	EMBL:ACUP02003419	InterPro:AP2/ERF-transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_06G068800	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1K8V5	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH52445
ProteinID:KRH52445	ProteinID:KRH52445.1	ProteinID:KRH52446.1	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000233A2C2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:5272614..5274133

Molecular Weight (calculated)

20792.3 Da

IEP (calculated)

6.281

GRAVY (calculated)

-0.804

Length

185 amino acids

Sequence
(BLAST)

001: MVQTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT NFPTSKNQAE ADDNNNTDTF LSPKALSELL STKLRKYCKD
101: PAPSLTCLRL DADNSHIGVW QKGAGPHSGS NWVMRLELGK KQITEEGSES TESPQSSTNG ATENNEVEEE DRVALQMIEE LLNWN

Best Arabidopsis Sequence Match ( AT5G25390.2 )
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Arabidopsis Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.