CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52445	Soybean	nucleus	89.06	92.43
Solyc06g053240.2.1	Tomato	nucleus	14.06	87.1
VIT_04s0008g05440.t01	Wine grape	nucleus	67.71	67.01
KRH05157	Soybean	nucleus	69.27	66.83
KRH09737	Soybean	nucleus	56.77	61.93
KRH47461	Soybean	nucleus	58.85	59.79
KRH44444	Soybean	nucleus	59.38	57.0
PGSC0003DMT400077702	Potato	nucleus	57.81	54.95
KRH62994	Soybean	nucleus	59.9	52.75
KRH54960	Soybean	nucleus	59.9	52.51
KRH20262	Soybean	nucleus	60.42	48.74
KRH03696	Soybean	nucleus	60.42	48.54
KRH09667	Soybean	mitochondrion, nucleus	35.42	38.2
KRH61698	Soybean	mitochondrion, nucleus	37.5	37.31
KRH52366	Soybean	mitochondrion, nucleus	37.5	37.11
KRH47384	Soybean	mitochondrion, nucleus	37.5	37.11
KRH12836	Soybean	nucleus	24.48	37.01
KRH44522	Soybean	mitochondrion	36.98	36.41
KRH15790	Soybean	nucleus	37.5	36.18
KRH05258	Soybean	nucleus	38.02	36.14
KRH23632	Soybean	nucleus	34.9	29.65
KRH53092	Soybean	nucleus	28.12	17.88
KRH77640	Soybean	nucleus	28.12	17.2
KRH16699	Soybean	nucleus	27.08	16.67
KRH62373	Soybean	nucleus	27.08	16.56
KRH31278	Soybean	nucleus	27.08	16.35
KRH59367	Soybean	nucleus	26.56	16.35
KRH43213	Soybean	nucleus	26.56	16.35
KRH27850	Soybean	nucleus	27.6	16.31
KRG97594	Soybean	nucleus	26.04	16.18
KRH18890	Soybean	nucleus	26.04	16.08
KRH34596	Soybean	nucleus	23.96	11.89
KRH55997	Soybean	nucleus	22.92	10.92
KRH25541	Soybean	nucleus	22.92	10.81
KRG92191	Soybean	nucleus	22.92	10.78
KRH26929	Soybean	nucleus	22.92	10.43
KRH22409	Soybean	nucleus	22.4	10.26

Protein Annotations

EntrezGene:100806821	MapMan:15.5.7.1	MapMan:21.9.3.1	Gene3D:3.30.730.10	EMBL:ACUP02002188	InterPro:AP2/ERF-transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_04G067200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1JUD1	InterPro:IPR001471	InterPro:IPR036955
ProteinID:KRH61775.1	EnsemblPlants:KRH61776	ProteinID:KRH61776	ProteinID:KRH61776.1	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31194	PANTHER:PTHR31194:SF13	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI000233A7EB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:5617467..5619064

Molecular Weight (calculated)

21590.3 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.683

Length

192 amino acids

Sequence
(BLAST)

001: MVQAKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT NFPTSKNQAE ADHDNNNTFL SPKALSELLS TKLRKYCKDP
101: APSLTCLRLD ADNSHIGVWQ KGAGPHSGSN WVMRVELGKK QIITEGESTG SPQSTNIGAV ENNEVEVEVE VEEEEEEDRV ALQMIEELLN WN

Best Arabidopsis Sequence Match ( AT5G25390.2 )
(BLAST)

001: MVHSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFDTAE TAARAYDQAA VLMNGQSAKT NFPVIKSNGS NSLEINSALR SPKSLSELLN AKLRKNCKDQ
101: TPYLTCLRLD NDSSHIGVWQ KRAGSKTSPN WVKLVELGDK VNARPGGDIE TNKMKVRNED VQEDDQMAMQ MIEELLNWTC PGSGSIAQV

Arabidopsis Description

SHN3SHN3 [Source:UniProtKB/TrEMBL;Acc:A0A178USD7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.