CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	94.62	95.65
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	91.4	92.39
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	90.32	91.3
AT3G28857.1	Thale cress	mitochondrion	89.25	90.22
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	88.17	89.13
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	87.1	88.04
CDX67440	Canola	mitochondrion	81.72	82.61
CDY65320	Canola	mitochondrion	81.72	82.61
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	73.12	75.56
KRH18488	Soybean	mitochondrion	73.12	74.73
KRG93518	Soybean	mitochondrion	73.12	74.73
PGSC0003DMT400003587	Potato	nucleus	70.97	71.74
KRH40108	Soybean	cytosol, mitochondrion, nucleus, plastid	70.97	71.74
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	70.97	71.74
Solyc02g087860.2.1	Tomato	nucleus	70.97	71.74
PGSC0003DMT400017748	Potato	nucleus	70.97	70.97
CDY46428	Canola	nucleus	70.97	70.21
Solyc02g067380.2.1	Tomato	nucleus	70.97	70.21
CDY40269	Canola	nucleus	68.82	68.09
CDY28427	Canola	nucleus	67.74	67.02
CDX96550	Canola	cytosol, mitochondrion, nucleus, plastid	64.52	66.67
CDX91006	Canola	mitochondrion	66.67	66.67
CDY16207	Canola	nucleus	67.74	66.32
CDY69564	Canola	cytosol, nucleus	62.37	65.91
PGSC0003DMT400008752	Potato	plastid	67.74	65.62
CDX85562	Canola	mitochondrion	65.59	65.59
CDX73095	Canola	cytosol, mitochondrion, nucleus, plastid	63.44	65.56
CDY68961	Canola	mitochondrion	64.52	64.52
CDX69545	Canola	mitochondrion, plastid	64.52	63.83
CDX78615	Canola	mitochondrion	63.44	62.77
CDX85055	Canola	mitochondrion, plastid	63.44	62.77
CDX68180	Canola	cytosol, mitochondrion, nucleus, plastid	62.37	62.37
CDX85841	Canola	cytosol, mitochondrion, nucleus, plastid	62.37	62.37
CDX85840	Canola	cytosol, mitochondrion, nucleus, plastid	62.37	62.37
CDY24160	Canola	nucleus	61.29	61.29
CDY36934	Canola	nucleus	60.22	60.22

Protein Annotations

EnsemblPlants:CDY63469	EnsemblPlantsGene:GSBRNA2T00039316001	Gene3D:4.10.280.10	GO:A0A078JC25	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	PFscan:PS50888	ProteinID:CDY63469	ProteinID:CDY63469.1
SEG:seg	SUPFAM:SSF47459	UniParc:UPI0002665C5E	UniProt:A0A078JC25	MapMan:15.5.32	:

Description

BnaCnng42180DBnaCnng42180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC25]

Coordinates

chrLK034303:+:17654..18204

Molecular Weight (calculated)

10803.9 Da

IEP (calculated)

9.332

GRAVY (calculated)

-0.649

Length

93 amino acids

Sequence
(BLAST)

1: MSNRIRSRQS SSATRISDDQ MIDLVGKLRQ FLPEIRERRR SDKVSASKVL QDTCNYIRKL HREVDNLSDR LSLLLDSVDE DSQEAAVIRN LLM

Best Arabidopsis Sequence Match ( AT3G28857.1 )
(BLAST)

1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM

Arabidopsis Description

PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.