CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01162	Soybean	cytosol, mitochondrion, nucleus, plastid	98.91	98.91
KRH18488	Soybean	mitochondrion	89.13	90.11
KRG93518	Soybean	mitochondrion	89.13	90.11
VIT_14s0108g00420.t01	Wine grape	cytosol, mitochondrion, nucleus, plastid	84.78	86.67
Solyc02g087860.2.1	Tomato	nucleus	82.61	82.61
PGSC0003DMT400003587	Potato	nucleus	82.61	82.61
PGSC0003DMT400017748	Potato	nucleus	79.35	78.49
Solyc02g067380.2.1	Tomato	nucleus	79.35	77.66
KRH63380	Soybean	nucleus	77.17	77.17
CDY20013	Canola	cytosol, mitochondrion, nucleus, plastid	75.0	75.0
CDY70014	Canola	cytosol, mitochondrion, nucleus, plastid	75.0	75.0
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	75.0	75.0
AT3G28857.1	Thale cress	mitochondrion	73.91	73.91
CDX86409	Canola	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
CDY00110	Canola	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
CDY04040	Canola	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	73.91	73.91
PGSC0003DMT400008752	Potato	plastid	76.09	72.92
KRH45881	Soybean	mitochondrion	72.83	72.04
AT5G39860.1	Thale cress	mitochondrion	71.74	71.74
CDY65320	Canola	mitochondrion	71.74	71.74
CDX67440	Canola	mitochondrion	71.74	71.74
CDY63469	Canola	nucleus	71.74	70.97
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	70.65	70.65
KRH69304	Soybean	mitochondrion	69.57	68.82
KRG99125	Soybean	cytosol, mitochondrion, nucleus	69.57	68.82
KRH74825	Soybean	mitochondrion	68.48	67.74
KRH54526	Soybean	endoplasmic reticulum, vacuole	75.0	47.26
KRH46796	Soybean	nucleus	42.39	42.86
KRH54533	Soybean	nucleus	32.61	32.97
KRH63371	Soybean	nucleus	32.61	32.61

Protein Annotations

EntrezGene:100796852	MapMan:15.5.32	Gene3D:4.10.280.10	UniProt:A0A0R0ICN4	EMBL:ACUP02006021	ncoils:Coil
EnsemblPlantsGene:GLYMA_09G239100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH40108	ProteinID:KRH40108	ProteinID:KRH40108.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF299	SUPFAM:SSF47459	UniParc:UPI00018C699C	InterPro:bHLH_dom

Description

hypothetical protein

Coordinates

chr9:+:46162379..46164796

Molecular Weight (calculated)

10464.4 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.592

Length

92 amino acids

Sequence
(BLAST)

1: MSSRRSRQHS GSTRISDDQI IELVSKLRQL VPEIRNRRSD KVSASKVLQE TCNYIRSLHR EVSDLSERLS QLLTTIDADS AEAGIIRSLL NQ

Best Arabidopsis Sequence Match ( AT3G28857.1 )
(BLAST)

1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM

Arabidopsis Description

PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.