Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400014179 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39860.1 | PGSC0003DMT400014179 | AT2G43060.1 | 20009022 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087860.2.1 | Tomato | nucleus | 100.0 | 100.0 |
| PGSC0003DMT400017748 | Potato | nucleus | 90.22 | 89.25 |
| VIT_14s0108g00420.t01 | Wine grape | cytosol, mitochondrion, nucleus, plastid | 86.96 | 88.89 |
| KRH40108 | Soybean | cytosol, mitochondrion, nucleus, plastid | 82.61 | 82.61 |
| KRH01162 | Soybean | cytosol, mitochondrion, nucleus, plastid | 82.61 | 82.61 |
| PGSC0003DMT400059345 | Potato | nucleus | 77.17 | 82.56 |
| KRH18488 | Soybean | mitochondrion | 81.52 | 82.42 |
| KRG93518 | Soybean | mitochondrion | 81.52 | 82.42 |
| PGSC0003DMT400008752 | Potato | plastid | 84.78 | 81.25 |
| AT5G39860.1 | Thale cress | mitochondrion | 77.17 | 77.17 |
| CDY70014 | Canola | cytosol, mitochondrion, nucleus, plastid | 76.09 | 76.09 |
| CDY20013 | Canola | cytosol, mitochondrion, nucleus, plastid | 76.09 | 76.09 |
| CDY00110 | Canola | cytosol, mitochondrion, nucleus, plastid | 76.09 | 76.09 |
| Bra033063.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 76.09 | 76.09 |
| AT3G28857.1 | Thale cress | mitochondrion | 76.09 | 76.09 |
| CDY65320 | Canola | mitochondrion | 75.0 | 75.0 |
| CDY04040 | Canola | cytosol, mitochondrion, nucleus, plastid | 75.0 | 75.0 |
| CDX67440 | Canola | mitochondrion | 75.0 | 75.0 |
| CDX86409 | Canola | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| Bra028443.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| Bra025358.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 73.91 | 73.91 |
| CDY63469 | Canola | nucleus | 71.74 | 70.97 |
| PGSC0003DMT400007430 | Potato | mitochondrion | 70.65 | 68.42 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400003587 | EnsemblPlantsGene:PGSC0003DMG400001418 | EntrezGene:102588283 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | PFscan:PS50888 | PGSC:PGSC0003DMG400001418 | RefSeq:XP_006338463.1 |
| SEG:seg | SUPFAM:SSF47459 | UniParc:UPI000181BBAC | UniProt:M0ZLZ0 | MapMan:15.5.32 | : |
Description
Transcription factor style2.1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001418]
Coordinates
chr2:+:46311387..46313353
Molecular Weight (calculated)
10363.3 Da
IEP (calculated)
10.107
GRAVY (calculated)
-0.545
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRQSS TGSSRISDDQ IIELVSKLQQ LLPEIRNRRS SKASASKVLQ ETCNYIRNLN RQVDDLSDRL SQLLSTIDAD SPEAAIIRSL LM
1: MSNRRSRQTS NASRISDDQM IDLVSKLRQF LPEIHERRRS DKVSASKVLQ ETCNYIRKLH REVDNLSDRL SQLLDSVDED SPEAAVIRSL LM
Arabidopsis Description
PRE5Transcription factor PRE5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.