Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g007210.2.1 | Tomato | nucleus | 100.0 | 100.0 |
| VIT_01s0026g02030.t01 | Wine grape | mitochondrion | 93.02 | 86.96 |
| AT1G26945.1 | Thale cress | nucleus | 86.05 | 78.72 |
| Bra016299.1-P | Field mustard | nucleus | 86.05 | 78.72 |
| CDY46428 | Canola | nucleus | 86.05 | 78.72 |
| PGSC0003DMT400003587 | Potato | nucleus | 82.56 | 77.17 |
| Bra012435.1-P | Field mustard | nucleus | 83.72 | 76.6 |
| CDY40269 | Canola | nucleus | 83.72 | 76.6 |
| PGSC0003DMT400007430 | Potato | mitochondrion | 83.72 | 75.79 |
| CDY28427 | Canola | nucleus | 82.56 | 75.53 |
| PGSC0003DMT400017748 | Potato | nucleus | 81.4 | 75.27 |
| Bra024672.1-P | Field mustard | nucleus | 81.4 | 73.68 |
| CDY16207 | Canola | nucleus | 81.4 | 73.68 |
| PGSC0003DMT400008752 | Potato | plastid | 72.09 | 64.58 |
Protein Annotations
| EntrezGene:102591520 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1C449 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400023056 | PGSC:PGSC0003DMG400023056 | EnsemblPlants:PGSC0003DMT400059345 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF299 | SUPFAM:SSF47459 | UniParc:UPI0001BFBE5C | RefSeq:XP_006363238.1 | InterPro:bHLH_dom | SEG:seg |
Description
Transcription regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400023056]
Coordinates
chr5:+:5635833..5637709
Molecular Weight (calculated)
9800.7 Da
IEP (calculated)
9.363
GRAVY (calculated)
-0.572
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSRSRI SDDQIADLVS KLQQLIPEIR NRRSDKVSAS KVLQETCNYI RNLHREVDGL SERLSQLLES TDSDSAQAAI IRSLLM
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Arabidopsis Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.