Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016299.1-P | Field mustard | nucleus | 97.87 | 97.87 |
| CDY46428 | Canola | nucleus | 97.87 | 97.87 |
| Bra012435.1-P | Field mustard | nucleus | 96.81 | 96.81 |
| CDY40269 | Canola | nucleus | 96.81 | 96.81 |
| CDY28427 | Canola | nucleus | 95.74 | 95.74 |
| Bra024672.1-P | Field mustard | nucleus | 95.74 | 94.74 |
| CDY16207 | Canola | nucleus | 95.74 | 94.74 |
| VIT_01s0026g02030.t01 | Wine grape | mitochondrion | 85.11 | 86.96 |
| PGSC0003DMT400059345 | Potato | nucleus | 78.72 | 86.05 |
| Solyc05g007210.2.1 | Tomato | nucleus | 78.72 | 86.05 |
| AT1G74500.1 | Thale cress | nucleus | 75.53 | 76.34 |
| AT3G28857.1 | Thale cress | mitochondrion | 71.28 | 72.83 |
| AT5G15160.1 | Thale cress | mitochondrion | 71.28 | 71.28 |
| AT3G47710.1 | Thale cress | nucleus | 69.15 | 70.65 |
| AT5G39860.1 | Thale cress | mitochondrion | 68.09 | 69.57 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:839585 | UniProt:A0A178WEJ4 | EMBL:AC005508 | ProteinID:AEE30763.1 |
| EMBL:AK119110 | ArrayExpress:AT1G26945 | EnsemblPlantsGene:AT1G26945 | RefSeq:AT1G26945 | TAIR:AT1G26945 | RefSeq:AT1G26945-TAIR-G |
| EnsemblPlants:AT1G26945.1 | TAIR:AT1G26945.1 | EMBL:BT004686 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0040007 | GO:GO:0040008 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | Symbol:KDR | RefSeq:NP_849712.1 | ProteinID:OAP15783.1 |
| PFAM:PF00010 | PO:PO:0000293 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF299 | UniProt:Q8GW32 |
| SUPFAM:SSF47459 | UniParc:UPI000000C429 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
Coordinates
chr1:+:9351160..9352833
Molecular Weight (calculated)
10718.5 Da
IEP (calculated)
9.250
GRAVY (calculated)
-0.766
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.