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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 3
  • mitochondrion 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400059345 Potato nucleus 86.96 93.02
Solyc05g007210.2.1 Tomato nucleus 86.96 93.02
AT1G26945.1 Thale cress nucleus 86.96 85.11
Bra016299.1-P Field mustard nucleus 86.96 85.11
CDY46428 Canola nucleus 86.96 85.11
VIT_14s0108g00420.t01 Wine grape cytosol, mitochondrion, nucleus, plastid 82.61 84.44
Bra012435.1-P Field mustard nucleus 84.78 82.98
CDY40269 Canola nucleus 84.78 82.98
VIT_17s0000g05900.t01 Wine grape mitochondrion 81.52 82.42
CDY28427 Canola nucleus 83.7 81.91
Bra024672.1-P Field mustard nucleus 82.61 80.0
CDY16207 Canola nucleus 82.61 80.0
VIT_17s0000g05950.t01 Wine grape nucleus 50.0 51.11
Protein Annotations
EntrezGene:100256731wikigene:100256731MapMan:15.5.32Gene3D:4.10.280.10UniProt:A5BU53EMBL:AM471266
ProteinID:CAN68305ProteinID:CAN68305.1ProteinID:CBI31987ProteinID:CBI31987.3ncoils:CoilEMBL:FN596002
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983InterPro:HLH_DNA-bd_sfInterPro:IPR011598
InterPro:IPR036638EntrezGene:LOC100256731wikigene:LOC100256731PFAM:PF00010PFscan:PS50888PANTHER:PTHR12565
PANTHER:PTHR12565:SF299SUPFAM:SSF47459UniParc:UPI0001521ABFArrayExpress:VIT_01s0026g02030EnsemblPlantsGene:VIT_01s0026g02030EnsemblPlants:VIT_01s0026g02030.t01
unigene:Vvi.20609RefSeq:XP_002276549RefSeq:XP_002276549.1InterPro:bHLH_domSEG:seg:
Description
No Description!
Coordinates
chr1:-:11409315..11410189
Molecular Weight (calculated)
10412.3 Da
IEP (calculated)
9.363
GRAVY (calculated)
-0.582
Length
92 amino acids
Sequence
(BLAST)
1: MSSRRSRSRQ PGVSRISDDQ IADLVSKLQQ LIPEIRNRRS DKVSASKVLQ ETCNYIRNLH REVDDLSDRL SALLASTDTD SDQAAIIRSL LM
Best Arabidopsis Sequence Match ( AT1G26945.1 )
(BLAST)
1: MSSRRSSRSR QSGSSRISDD QISDLVSKLQ HLIPELRRRR SDKVSASKVL QETCNYIRNL HREVDDLSDR LSELLASTDD NSAEAAIIRS LLNY
Arabidopsis Description
PRE6Transcription factor PRE6 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW32]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.