Factsheet for Bra008154.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004740.1-P
Bra004879.1-P
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P
Bra037738.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G74500.1	Bra004740.1-P	AT2G43060.1	21798944
AT1G74500.1	Bra037738.1-P	AT2G43060.1	21798944
AT1G74500.1	Bra004879.1-P	AT2G44950.1	21798944
AT1G74500.1	Bra040332.1-P	AT2G44950.1	21798944
AT1G74500.1	Bra006453.1-P	AT4G24840.1	21798944
AT1G74500.1	Bra013840.1-P	AT4G24840.1	21798944
AT1G74500.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69564	Canola	cytosol, nucleus	93.55	98.86
AT1G74500.1	Thale cress	nucleus	95.7	95.7
Bra015906.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	89.25	92.22
Bra003797.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	89.25	89.25
Solyc06g070910.2.1	Tomato	nucleus	79.57	80.43
Bra016299.1-P	Field mustard	nucleus	74.19	73.4
Bra024672.1-P	Field mustard	nucleus	74.19	72.63
Bra012435.1-P	Field mustard	nucleus	73.12	72.34
Bra018117.1-P	Field mustard	nucleus	69.89	69.89
Bra025358.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.52	65.22
Bra028443.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.52	65.22
Bra033063.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	64.52	65.22
Bra023508.1-P	Field mustard	mitochondrion	60.22	60.22
Bra008716.1-P	Field mustard	mitochondrion, plastid	59.14	58.51
Bra006286.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	56.99	56.38

Protein Annotations

EnsemblPlants:Bra008154.1	EnsemblPlants:Bra008154.1-P	EnsemblPlantsGene:Bra008154	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF172	PFAM:PF00010	PFscan:PS50888	SEG:seg
SUPFAM:SSF47459	UniParc:UPI0002545957	UniProt:M4CVA7	MapMan:15.5.32	:	:

Description

AT1G74500 (E=9e-036) | bHLH family protein

Coordinates

chrA02:-:13455821..13456190

Molecular Weight (calculated)

10562.4 Da

IEP (calculated)

8.533

GRAVY (calculated)

-0.675

Length

93 amino acids

Sequence
(BLAST)

1: MSGRRSRSRQ SSGTTRISED QINDLVIKLQ QLLPELRDSH RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALLRSL LTQ

Best Arabidopsis Sequence Match ( AT1G74500.1 )
(BLAST)

1: MSGRRSRSRQ SSGTSRISED QINDLIIKLQ QLLPELRDSR RSDKVSAARV LQDTCNYIRN LHREVDDLSE RLSELLANSD TAQAALIRSL LTQ

Arabidopsis Description

PRE3Transcription factor PRE3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA64]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.