Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06074 | Canola | nucleus | 98.04 | 98.6 |
| CDX71994 | Canola | nucleus | 94.41 | 93.63 |
| Bra003300.1-P | Field mustard | nucleus | 72.91 | 81.06 |
| Bra014603.1-P | Field mustard | nucleus | 73.46 | 76.01 |
| AT3G57800.1 | Thale cress | nucleus | 80.73 | 67.84 |
| Bra004679.1-P | Field mustard | nucleus | 56.7 | 67.22 |
| VIT_08s0007g07870.t01 | Wine grape | nucleus | 53.91 | 53.02 |
| KRG95332 | Soybean | nucleus | 51.68 | 50.55 |
| KRH71879 | Soybean | nucleus | 49.44 | 50.0 |
| KRH33022 | Soybean | nucleus | 49.44 | 49.58 |
| PGSC0003DMT400021130 | Potato | nucleus | 48.88 | 48.61 |
| Solyc10g079070.1.1 | Tomato | nucleus | 47.49 | 47.09 |
| KRH67006 | Soybean | nucleus | 50.56 | 45.25 |
| TraesCS7B01G303300.1 | Wheat | nucleus | 39.11 | 44.59 |
| TraesCS7D01G397300.1 | Wheat | nucleus, plastid | 39.11 | 44.3 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 47.49 | 43.93 |
| TraesCS7A01G403900.1 | Wheat | cytosol | 18.44 | 42.86 |
| HORVU7Hr1G094690.1 | Barley | plastid | 29.05 | 42.11 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 42.74 | 41.92 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 41.62 | 40.71 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 31.28 | 38.62 |
| Zm00001d046759_P001 | Maize | plastid | 37.43 | 37.64 |
| Zm00001d036807_P001 | Maize | nucleus | 37.99 | 36.76 |
| OQU76702 | Sorghum | nucleus | 39.11 | 34.15 |
| Bra037059.1-P | Field mustard | nucleus | 25.7 | 32.17 |
| Bra011540.1-P | Field mustard | nucleus | 28.21 | 30.79 |
| Bra034636.1-P | Field mustard | nucleus | 23.74 | 30.25 |
| Bra019935.1-P | Field mustard | nucleus | 22.07 | 29.48 |
| Bra022753.1-P | Field mustard | nucleus | 23.74 | 28.62 |
| Bra028335.1-P | Field mustard | nucleus | 25.7 | 27.71 |
| Bra014972.1-P | Field mustard | nucleus | 24.3 | 26.44 |
| Bra038336.1-P | Field mustard | plastid | 26.82 | 26.3 |
| Bra031700.1-P | Field mustard | nucleus | 22.35 | 24.46 |
| Bra029640.1-P | Field mustard | nucleus, plastid | 30.17 | 24.32 |
| Bra018461.1-P | Field mustard | nucleus | 21.23 | 23.6 |
| Bra020691.1-P | Field mustard | nucleus | 29.05 | 23.37 |
| Bra019962.1-P | Field mustard | nucleus | 21.79 | 23.01 |
| Bra004348.1-P | Field mustard | nucleus | 29.33 | 22.06 |
| Bra037478.1-P | Field mustard | nucleus | 29.05 | 21.22 |
| Os09t0474051-01 | Rice | plastid | 16.48 | 10.09 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | EnsemblPlantsGene:Bra007358 | EnsemblPlants:Bra007358.1 | EnsemblPlants:Bra007358.1-P |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M4CT16 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF112 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002542D58 | InterPro:bHLH_dom | SEG:seg |
Description
AT3G57800 (E=3e-083) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA09:-:28790829..28793883
Molecular Weight (calculated)
38916.8 Da
IEP (calculated)
6.377
GRAVY (calculated)
-0.589
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLTGAFGAR SAAVGACREP PGLESLHLGG GDGGFTALLE LPPTQAVELL HFTDPSPSSS QAAVAGIGLD VSPPPPPLHA YGALTFPSNA ALMERAARFS
101: VMANEQQNGN VSGETTTTSS VPSNSDRVKT EPGETDSSQR LENNRCGIGK RKELDKKVKG STKKKSKSSE ENEKLPYVHV RARRGQATDS HSLAERARRE
201: KINARMKLLQ ELVPGCDKIQ GTALVLDEII NHVQSLQRQV EMLSMRLAAV NPRIDFNLDT LLASENCSLI DGSFNGTAMQ LAWPHQVTET EQSFHHRQLQ
301: LQQPPQPQQW PYDGLNQPAW GREDDQGHGN EHNSLMAVSE NLMVGSASLH PNQVKMEL
101: VMANEQQNGN VSGETTTTSS VPSNSDRVKT EPGETDSSQR LENNRCGIGK RKELDKKVKG STKKKSKSSE ENEKLPYVHV RARRGQATDS HSLAERARRE
201: KINARMKLLQ ELVPGCDKIQ GTALVLDEII NHVQSLQRQV EMLSMRLAAV NPRIDFNLDT LLASENCSLI DGSFNGTAMQ LAWPHQVTET EQSFHHRQLQ
301: LQQPPQPQQW PYDGLNQPAW GREDDQGHGN EHNSLMAVSE NLMVGSASLH PNQVKMEL
001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL
Arabidopsis Description
BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.