CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71297	Soybean	nucleus	90.11	90.77
VIT_10s0003g01160.t01	Wine grape	nucleus	35.53	61.01
VIT_14s0068g01580.t01	Wine grape	nucleus	56.41	58.56
PGSC0003DMT400026449	Potato	mitochondrion	42.86	49.79
Solyc02g076920.2.1	Tomato	cytosol, nucleus, plastid	43.22	49.17
GSMUA_Achr10P...	Banana	nucleus	45.79	48.83
GSMUA_Achr7P10740_001	Banana	nucleus	42.86	46.61
GSMUA_Achr3P03510_001	Banana	nucleus	41.03	46.47
GSMUA_Achr2P20040_001	Banana	nucleus	42.12	46.18
KRH22294	Soybean	nucleus	41.76	45.78
KRH27035	Soybean	nucleus	41.39	45.38
KRH55806	Soybean	nucleus	39.93	42.08
KRH25720	Soybean	extracellular, nucleus	38.83	41.09
HORVU3Hr1G027630.3	Barley	nucleus	36.63	39.68
Os01t0218100-01	Rice	nucleus	37.73	38.58
TraesCS3A01G142900.1	Wheat	nucleus	36.63	38.46
KXG31555	Sorghum	nucleus	37.73	38.15
TraesCS3D01G144700.1	Wheat	nucleus	35.53	38.04
KRG95083	Soybean	nucleus	28.94	31.47
KRH66750	Soybean	plastid	28.21	30.92
KRH14931	Soybean	nucleus, plastid	28.21	29.17
KRG97707	Soybean	nucleus	29.3	29.09
KRH54953	Soybean	nucleus	26.74	28.85
KRH31167	Soybean	nucleus	28.94	28.21
KRH16843	Soybean	cytosol	24.54	27.92
KRG92013	Soybean	nucleus	35.16	27.67
KRH34774	Soybean	nucleus	35.16	27.2
KRH72457	Soybean	nucleus	24.91	26.77
KRH69661	Soybean	mitochondrion	20.51	26.42
KRH73206	Soybean	golgi, nucleus	28.21	26.19
KRH70619	Soybean	nucleus	34.8	25.54
KRH75497	Soybean	nucleus	35.16	25.53

Protein Annotations

EntrezGene:100804756	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02004666	EnsemblPlantsGene:GLYMA_07G205800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1KLT6	InterPro:IPR011598
InterPro:IPR036638	EnsemblPlants:KRH50172	ProteinID:KRH50172	ProteinID:KRH50172.1	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF82	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00023381FE	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:37482124..37486214

Molecular Weight (calculated)

29546.3 Da

IEP (calculated)

7.589

GRAVY (calculated)

-0.215

Length

273 amino acids

Sequence
(BLAST)

001: MVYSFYDKTS SSGSDISGLI NPTLNNLGAS NGVSRGGLSS PHSLVFESEK GELVKCPATA KVGKSEICEA KALAALKNHS EAERRRRERI NAHLATLRGL
101: VPSTEKMDKA TLLAEVISQV KELKKNAMEA SKGFLIPMDA DEVKVEPYDD EGGDGSMSYC ATICCDFRSE ILSDLRQTLD SLPLHLVKAE ISTLAGRMKN
201: VFVFTCCKGN INNIDIEKCQ ALASTVHQAL CSVLDKASAT LDFSPRTSHA SKRRRLCFIE TSTSSCNHGS CLC

Best Arabidopsis Sequence Match ( AT1G68810.1 )
(BLAST)

001: MCAKKEEEEE EEEDSSEAMN NIQNYQNDLF FHQLISHHHH HHHDPSQSET LGASGNVGSG FTIFSQDSVS PIWSLPPPTS IQPPFDQFPP PSSSPASFYG
101: SFFNRSRAHH QGLQFGYEGF GGATSAAHHH HEQLRILSEA LGPVVQAGSG PFGLQAELGK MTAQEIMDAK ALAASKSHSE AERRRRERIN NHLAKLRSIL
201: PNTTKTDKAS LLAEVIQHVK ELKRETSVIS ETNLVPTESD ELTVAFTEEE ETGDGRFVIK ASLCCEDRSD LLPDMIKTLK AMRLKTLKAE ITTVGGRVKN
301: VLFVTGEESS GEEVEEEYCI GTIEEALKAV MEKSNVEESS SSGNAKRQRM SSHNTITIVE QQQQYNQR

Arabidopsis Description

BHLH30Transcription factor bHLH30 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7Y1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.