Factsheet for Zm00001d030306_P009

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d005300_P001
Zm00001d006417_P002
Zm00001d017254_P002
Zm00001d017475_P002
Zm00001d019712_P001
Zm00001d021532_P001
Zm00001d025208_P002
Zm00001d039321_P008
Zm00001d043764_P005

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54770.1	Zm00001d043764_P005	AT1G06510.1	21798944
AT1G54770.1	Zm00001d006417_P002	AT1G30860.1	21798944
AT1G54770.1	Zm00001d021532_P001	AT1G30860.1	21798944
AT1G54770.1	Zm00001d005300_P001	AT2G23290.1	21798944
AT1G54770.1	Zm00001d019712_P001	AT2G23290.1	21798944
AT1G54770.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT1G54770.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT1G54770.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT1G54770.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT1G54770.1	Zm00001d017254_P002	AT5G58720.1	21798944
AT1G54770.1	Zm00001d039321_P008	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013738_P005	Maize	mitochondrion	44.0	39.05
Zm00001d017927_P001	Maize	nucleus	43.33	32.99
EES05586	Sorghum	plastid	43.33	32.99
KRH16007	Soybean	nucleus	24.67	32.46
Os02t0730500-01	Rice	nucleus, plastid	38.67	29.74
TraesCS6B01G322000.1	Wheat	plastid	36.67	27.78
TraesCS6D01G272800.1	Wheat	nucleus	36.67	27.64
TraesCS6A01G291500.1	Wheat	plastid	36.67	27.64
GSMUA_Achr5P02030_001	Banana	cytosol	32.0	24.87
Zm00001d014233_P001	Maize	nucleus, plastid	43.33	23.64
Solyc05g053220.2.1	Tomato	nucleus	30.0	23.32
PGSC0003DMT400069825	Potato	nucleus	29.33	22.8
Zm00001d051760_P001	Maize	plastid	43.33	22.65
AT5G30495.2	Thale cress	nucleus	27.33	20.92
HORVU6Hr1G072940.1	Barley	mitochondrion, plastid	36.67	20.83
KRH27951	Soybean	nucleus	27.33	20.71
AT1G54770.1	Thale cress	nucleus	26.0	20.63
KRH77516	Soybean	endoplasmic reticulum	27.33	20.6
KRH16004	Soybean	nucleus	26.0	20.1
CDY59823	Canola	nucleus	22.0	17.19
CDY00016	Canola	nucleus	22.0	17.19
Bra036122.1-P	Field mustard	nucleus	22.0	17.19
VIT_05s0020g00780.t01	Wine grape	nucleus	28.67	14.33

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6KBV1	InterPro:ATPase_AAA_core	InterPro:Fcf2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0036402
GO:GO:1901800	ProteinID:ONM00778.1	ProteinID:ONM00779.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF08698
InterPro:PSMC4	PANTHER:PTHR23073	PANTHER:PTHR23073:SF8	SUPFAM:SSF52540	UniParc:UPI000843FD00	EnsemblPlantsGene:Zm00001d030306
EnsemblPlants:Zm00001d030306_P009	EnsemblPlants:Zm00001d030306_T009	:	:	:	:

Description

Fcf2 pre-rRNA processing protein

Coordinates

chr1:+:121223595..121228452

Molecular Weight (calculated)

17400.0 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.541

Length

150 amino acids

Sequence
(BLAST)

001: MDGFDQTVIV KVVMATNRVD TLDPTSLRPG RLDRKVEFPL PDWRQKRLVF QVCTAKKNLS EEANLEDYFC RPDKICDADV ELLRHIIDLK RHFKRAGKSK
101: VVPKYFQVGT VVEPASEFYS SRLKNRERKA TLVDELLSDQ SLKSYRVQPA

Best Arabidopsis Sequence Match ( AT5G58290.1 )
(BLAST)

001: MASAAVASMV LDPKASPALM DLSTADEEDL YGRLKSLERQ LEFTDIQEEY VKDEQKNLKR ELLRAQEEVK RIQSVPLVIG QFMEMVDQNN GIVGSTTGSN
101: YYVRILSTIN RELLKPSASV ALHRHSNALV DVLPPEADSS ISLLSQSEKP DVSYNDIGGC DIQKQEIREA VELPLTHHEL YKQIGIDPPR GVLLYGPPGT
201: GKTMLAKAVA NHTTAAFIRV VGSEFVQKYL GEGPRMVRDV FRLAKENAPA IIFIDEVDAI ATARFDAQTG ADREVQRILM ELLNQMDGFD QTVNVKVIMA
301: TNRADTLDPA LLRPGRLDRK IEFPLPDRRQ KRLVFQVCTS KMNLSDEVDL EDYVSRPDKI SAAEIAAICQ EAGMHAVRKN RYVILPKDFE KGYRANVKKP
401: DTDFEFYK

Arabidopsis Description

RPT3RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.