Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G54770.1 | Thale cress | nucleus | 85.71 | 88.89 |
| CDY59823 | Canola | nucleus | 72.45 | 73.96 |
| Bra036122.1-P | Field mustard | nucleus | 71.94 | 73.44 |
| CDY00016 | Canola | nucleus | 70.92 | 72.4 |
| Solyc05g053220.2.1 | Tomato | nucleus | 63.78 | 64.77 |
| PGSC0003DMT400069825 | Potato | nucleus | 63.27 | 64.25 |
| KRH16007 | Soybean | nucleus | 32.14 | 55.26 |
| KRH27951 | Soybean | nucleus | 55.61 | 55.05 |
| KRH16004 | Soybean | nucleus | 54.08 | 54.64 |
| KRH77516 | Soybean | endoplasmic reticulum | 55.1 | 54.27 |
| TraesCS6B01G322000.1 | Wheat | plastid | 54.08 | 53.54 |
| Os02t0730500-01 | Rice | nucleus, plastid | 53.06 | 53.33 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 54.08 | 53.27 |
| EES05586 | Sorghum | plastid | 53.06 | 52.79 |
| TraesCS6A01G291500.1 | Wheat | plastid | 53.57 | 52.76 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 51.53 | 52.33 |
| Zm00001d017927_P001 | Maize | nucleus | 52.04 | 51.78 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 60.71 | 39.67 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 53.06 | 39.39 |
| Zm00001d051760_P001 | Maize | plastid | 51.53 | 35.19 |
| Zm00001d030306_P009 | Maize | cytosol | 20.92 | 27.33 |
| Zm00001d013738_P005 | Maize | mitochondrion | 20.92 | 24.26 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 18.88 | 13.45 |
Protein Annotations
| MapMan:35.2 | EntrezGene:833073 | UniProt:A0A178UKZ6 | ProteinID:AED93871.1 | ProteinID:AED93872.1 | ArrayExpress:AT5G30495 |
| EnsemblPlantsGene:AT5G30495 | RefSeq:AT5G30495 | TAIR:AT5G30495 | RefSeq:AT5G30495-TAIR-G | EnsemblPlants:AT5G30495.2 | TAIR:AT5G30495.2 |
| UniProt:F4KCY1 | InterPro:Fcf2 | GO:GO:0003674 | GO:GO:0008150 | RefSeq:NP_680266.2 | RefSeq:NP_851091.1 |
| ProteinID:OAO94439.1 | PFAM:PF08698 | PO:PO:0000293 | PANTHER:PTHR21686 | UniParc:UPI0000196F57 | SEG:seg |
Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
Coordinates
chr5:+:11379907..11381657
Molecular Weight (calculated)
22550.4 Da
IEP (calculated)
10.696
GRAVY (calculated)
-0.945
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.