Subcellular Localization
min:
: max
Winner_takes_all: plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G272800.1 | Wheat | nucleus | 71.97 | 95.48 |
| TraesCS6B01G322000.1 | Wheat | plastid | 71.59 | 95.45 |
| TraesCS6A01G291500.1 | Wheat | plastid | 70.45 | 93.47 |
| Os02t0730500-01 | Rice | nucleus, plastid | 60.23 | 81.54 |
| EES05586 | Sorghum | plastid | 59.47 | 79.7 |
| Zm00001d017927_P001 | Maize | nucleus | 59.09 | 79.19 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 46.21 | 63.21 |
| Solyc05g053220.2.1 | Tomato | nucleus | 45.45 | 62.18 |
| PGSC0003DMT400069825 | Potato | nucleus | 45.08 | 61.66 |
| KRH16007 | Soybean | nucleus | 24.24 | 56.14 |
| KRH77516 | Soybean | endoplasmic reticulum | 40.91 | 54.27 |
| KRH27951 | Soybean | nucleus | 40.53 | 54.04 |
| AT1G54770.1 | Thale cress | nucleus | 38.64 | 53.97 |
| Bra036122.1-P | Field mustard | nucleus | 38.64 | 53.12 |
| CDY59823 | Canola | nucleus | 38.64 | 53.12 |
| AT5G30495.2 | Thale cress | nucleus | 39.39 | 53.06 |
| Zm00001d051760_P001 | Maize | plastid | 57.58 | 52.96 |
| CDY00016 | Canola | nucleus | 38.26 | 52.6 |
| KRH16004 | Soybean | nucleus | 37.5 | 51.03 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 45.45 | 40.0 |
| Zm00001d030306_P009 | Maize | cytosol | 20.83 | 36.67 |
| Zm00001d013738_P005 | Maize | mitochondrion | 21.59 | 33.73 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 23.11 | 22.18 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G072940.1 | EnsemblPlantsGene:HORVU6Hr1G072940 | InterPro:Fcf2 | PANTHER:PTHR21686 | PFAM:PF08698 | SEG:seg |
| UniParc:UPI000B47D41C | UniProt:A0A287UN63 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:506374511..506377200
Molecular Weight (calculated)
29718.1 Da
IEP (calculated)
11.607
GRAVY (calculated)
-0.856
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: AFPRFFPCRS GTRALSPVAV PPTPRRLLGF LLFPSTASPC RRRATQQPPG QAKQQLSKLT RARRAMSSSA APAPIGLSWA PQLPSLAAAG GSKKGSAPTP
101: SIDAQDSLWK PRNELVDGLY VPPRDPRKVN KMARKNVKDT AGKGWFDMPA PSITPELKKD LEILQLRHVM DPKRHFKRSG KSKALPKYFQ VGTVIEPASE
201: YYSSRLTKHE RKQTLVDELL SDQKLKNYRM RKVREIQEAR TPGGNQKWKN KGKQTFKRAK DRRK
101: SIDAQDSLWK PRNELVDGLY VPPRDPRKVN KMARKNVKDT AGKGWFDMPA PSITPELKKD LEILQLRHVM DPKRHFKRSG KSKALPKYFQ VGTVIEPASE
201: YYSSRLTKHE RKQTLVDELL SDQKLKNYRM RKVREIQEAR TPGGNQKWKN KGKQTFKRAK DRRK
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.