CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
nucleus 4

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH12155
KRH14485
KRH24006
KRH25284
KRH27971
KRH28419
KRH29310
KRH30312
KRH30384
KRH37161
KRH57983
KRH73638
KRH77058
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54770.1	KRH14485	AT1G06510.1	21798944
AT1G54770.1	KRH73638	AT1G06510.1	21798944
AT1G54770.1	KRH12155	AT1G30860.1	21798944
AT1G54770.1	KRH37161	AT1G30860.1	21798944
AT1G54770.1	KRH28419	AT2G23290.1	21798944
AT1G54770.1	KRH57983	AT2G23290.1	21798944
AT1G54770.1	KRH77058	AT2G23290.1	21798944
AT1G54770.1	KRH24006	AT3G48150.1	21798944
AT1G54770.1	KRH27971	AT3G48150.1	21798944
AT1G54770.1	KRH29310	AT3G48150.1	21798944
AT1G54770.1	KRH77487	AT3G48150.1	21798944
AT1G54770.1	KRH25284	AT5G22310.1	21798944
AT1G54770.1	KRH30384	AT5G22310.1	21798944
AT1G54770.1	KRG98291	AT5G58720.1	21798944
AT1G54770.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27951	Soybean	nucleus	97.49	97.98
KRH16004	Soybean	nucleus	91.96	94.33
KRH16007	Soybean	nucleus	53.77	93.86
Solyc05g053220.2.1	Tomato	nucleus	66.33	68.39
PGSC0003DMT400069825	Potato	nucleus	65.33	67.36
GSMUA_Achr5P02030_001	Banana	cytosol	56.78	58.55
AT1G54770.1	Thale cress	nucleus	54.77	57.67
Zm00001d017927_P001	Maize	nucleus	56.78	57.36
EES05586	Sorghum	plastid	56.78	57.36
Os02t0730500-01	Rice	nucleus, plastid	55.78	56.92
AT5G30495.2	Thale cress	nucleus	54.27	55.1
TraesCS6B01G322000.1	Wheat	plastid	54.77	55.05
TraesCS6D01G272800.1	Wheat	nucleus	54.77	54.77
TraesCS6A01G291500.1	Wheat	plastid	54.27	54.27
CDY59823	Canola	nucleus	50.75	52.6
CDY00016	Canola	nucleus	50.75	52.6
Bra036122.1-P	Field mustard	nucleus	50.75	52.6
VIT_05s0020g00780.t01	Wine grape	nucleus	68.84	45.67
HORVU6Hr1G072940.1	Barley	mitochondrion, plastid	54.27	40.91
Zm00001d051760_P001	Maize	plastid	56.78	39.37
Zm00001d030306_P009	Maize	cytosol	20.6	27.33
Zm00001d013738_P005	Maize	mitochondrion	23.12	27.22
Zm00001d014233_P001	Maize	nucleus, plastid	23.12	16.73

Protein Annotations

EMBL:ACUP02000677	EnsemblPlants:KRH77516	EnsemblPlantsGene:GLYMA_01G218300	EntrezGene:100793132	InterPro:Fcf2	PANTHER:PTHR21686
PFAM:PF08698	ProteinID:KRH77516	ProteinID:KRH77516.1	ProteinID:KRH77517.1	SEG:seg	UniParc:UPI00023375F8
UniProt:I1JA57	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:54838265..54841891

Molecular Weight (calculated)

22621.2 Da

IEP (calculated)

10.990

GRAVY (calculated)

-0.975

Length

199 amino acids

Sequence
(BLAST)

001: MPAHKPVVGL SWQPQLPIPS SFKATDGSHT KPQTEASSST VRKSSSELVD GLFVPPNDPR KLNKLLRKQA KDTAGKNWFN MPAQTITPEL QKDLKLLKLR
101: AALDPKRHYK KGDSKSKTLP KYFQVGTVVD SPLDFFSGRL TKKERKATLA DELLSDQNLA AYRKRKVREI EEQNRPAGNE KWKIKGSNSR KRAKERRIY

Best Arabidopsis Sequence Match ( AT5G30495.1 )
(BLAST)

001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN

Arabidopsis Description

Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.