Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
nucleus: 27291164 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77516 | Soybean | endoplasmic reticulum | 97.98 | 97.49 |
| KRH16004 | Soybean | nucleus | 93.94 | 95.88 |
| KRH16007 | Soybean | nucleus | 54.04 | 93.86 |
| Solyc05g053220.2.1 | Tomato | nucleus | 67.17 | 68.91 |
| PGSC0003DMT400069825 | Potato | nucleus | 66.16 | 67.88 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 57.07 | 58.55 |
| AT1G54770.1 | Thale cress | nucleus | 55.05 | 57.67 |
| Zm00001d017927_P001 | Maize | nucleus | 57.07 | 57.36 |
| EES05586 | Sorghum | plastid | 57.07 | 57.36 |
| Os02t0730500-01 | Rice | nucleus, plastid | 56.06 | 56.92 |
| AT5G30495.2 | Thale cress | nucleus | 55.05 | 55.61 |
| TraesCS6B01G322000.1 | Wheat | plastid | 54.55 | 54.55 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 54.55 | 54.27 |
| TraesCS6A01G291500.1 | Wheat | plastid | 54.04 | 53.77 |
| CDY59823 | Canola | nucleus | 51.52 | 53.12 |
| CDY00016 | Canola | nucleus | 51.52 | 53.12 |
| Bra036122.1-P | Field mustard | nucleus | 51.52 | 53.12 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 69.19 | 45.67 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 54.04 | 40.53 |
| Zm00001d051760_P001 | Maize | plastid | 57.07 | 39.37 |
| Zm00001d013738_P005 | Maize | mitochondrion | 23.74 | 27.81 |
| Zm00001d030306_P009 | Maize | cytosol | 20.71 | 27.33 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 23.23 | 16.73 |
Protein Annotations
| EMBL:ACUP02006735 | EnsemblPlants:KRH27951 | EnsemblPlantsGene:GLYMA_11G024900 | EntrezGene:100785966 | InterPro:Fcf2 | PANTHER:PTHR21686 |
| PFAM:PF08698 | ProteinID:KRH27951 | ProteinID:KRH27951.1 | SEG:seg | UniParc:UPI000233CE3C | UniProt:I1LGG7 |
| MapMan:35.2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:1761162..1764478
Molecular Weight (calculated)
22549.2 Da
IEP (calculated)
10.956
GRAVY (calculated)
-1.001
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MPERKPVVGL SWQPQLPIPS SLKATDGSHT KPQTEASSTV RKSSSELVDG LFVPPNDPKK LNKLLRKQAK DTAGKNWFNM PAQTITPELQ KDLKLLKLRA
101: ALDPKRHYKK GDSKSKTLPK YFQVGTVVDS PLDFFSGRLT KKERKATLAD ELLSDQNLAA YRKRKVREIE EQNRPAGNEK WKIKGSNSRK RAKERRIY
101: ALDPKRHYKK GDSKSKTLPK YFQVGTVVDS PLDFFSGRLT KKERKATLAD ELLSDQNLAA YRKRKVREIE EQNRPAGNEK WKIKGSNSRK RAKERRIY
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.