Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030306_P009 | Maize | cytosol | 39.05 | 44.0 |
| Zm00001d017927_P001 | Maize | nucleus | 39.05 | 33.5 |
| EES05586 | Sorghum | plastid | 39.05 | 33.5 |
| KRH16007 | Soybean | nucleus | 21.3 | 31.58 |
| Os02t0730500-01 | Rice | nucleus, plastid | 34.91 | 30.26 |
| TraesCS6B01G322000.1 | Wheat | plastid | 34.32 | 29.29 |
| TraesCS6D01G272800.1 | Wheat | nucleus | 34.32 | 29.15 |
| TraesCS6A01G291500.1 | Wheat | plastid | 34.32 | 29.15 |
| Solyc05g053220.2.1 | Tomato | nucleus | 28.99 | 25.39 |
| GSMUA_Achr5P02030_001 | Banana | cytosol | 28.4 | 24.87 |
| PGSC0003DMT400069825 | Potato | nucleus | 28.4 | 24.87 |
| KRH27951 | Soybean | nucleus | 27.81 | 23.74 |
| Zm00001d051760_P001 | Maize | plastid | 40.24 | 23.69 |
| Zm00001d014233_P001 | Maize | nucleus, plastid | 37.87 | 23.27 |
| KRH16004 | Soybean | nucleus | 26.63 | 23.2 |
| KRH77516 | Soybean | endoplasmic reticulum | 27.22 | 23.12 |
| HORVU6Hr1G072940.1 | Barley | mitochondrion, plastid | 33.73 | 21.59 |
| AT1G54770.1 | Thale cress | nucleus | 23.67 | 21.16 |
| AT5G30495.2 | Thale cress | nucleus | 24.26 | 20.92 |
| CDY59823 | Canola | nucleus | 20.12 | 17.71 |
| CDY00016 | Canola | nucleus | 20.12 | 17.71 |
| Bra036122.1-P | Field mustard | nucleus | 20.12 | 17.71 |
| VIT_05s0020g00780.t01 | Wine grape | nucleus | 27.22 | 15.33 |
Protein Annotations
| EnsemblPlants:Zm00001d013738_P005 | EnsemblPlants:Zm00001d013738_T005 | EnsemblPlantsGene:Zm00001d013738 | Gene3D:3.40.50.300 | InterPro:Fcf2 | PANTHER:PTHR21686 |
| PFAM:PF08698 | ProteinID:AQK64270.1 | SEG:seg | UniParc:UPI00084399EB | UniProt:A0A1D6GLT0 | MapMan:35.2 |
Description
Fcf2 pre-rRNA processing protein
Coordinates
chr5:+:18983084..18988226
Molecular Weight (calculated)
19532.8 Da
IEP (calculated)
10.306
GRAVY (calculated)
-0.188
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPTPTRRRA KPALTSGQIY LPVWCCAYDH LVKMLQQAYA QMDGFDQTVN VKVVMATNRA HTLDSTLLRP VSDVPVSTRL LRHIIDLKRH FKRVGKFKVV
101: LKYFQVGTVV EPASEFYSSR LKNRERKATL VDELLSDQSL KSYRYAHHTF AILHVHQWTV ACFSVQDFL
101: LKYFQVGTVV EPASEFYSSR LKNRERKATL VDELLSDQSL KSYRYAHHTF AILHVHQWTV ACFSVQDFL
001: MAETKPLIGL TWEPKLPGLS LDTKTCSTSS KRVESHESSS LWMSKSELVD GLCLPPNDPK KINKMIRKQI KDTTGSNWFD MPAPTMTPEL KRDLQLLKLR
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
101: TVMDPAVHYK KSVSRSKLAE KYFQIGTVIE PAEEFYGRLT KKNRKATLAD ELVSDPKVSQ YRKRKVKEIE EKSRAVTNKK WKKKGNQTTN KKQRRN
Arabidopsis Description
Fcf2 pre-rRNA processing protein [Source:UniProtKB/TrEMBL;Acc:F4KCY1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.