Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81489 | Canola | nucleus | 2.01 | 12.66 |
| CDY61790 | Canola | endoplasmic reticulum, extracellular | 4.63 | 12.17 |
| CDY35289 | Canola | nucleus | 4.12 | 10.96 |
| CDY02356 | Canola | cytosol | 1.51 | 9.09 |
| CDX75227 | Canola | plastid | 6.64 | 8.76 |
| Zm00001d053726_P001 | Maize | plastid | 6.74 | 8.69 |
| Solyc08g022030.2.1 | Tomato | nucleus | 6.64 | 8.57 |
| CDX68825 | Canola | plastid | 6.44 | 8.5 |
| KRH15859 | Soybean | endoplasmic reticulum, vacuole | 6.14 | 8.5 |
| PGSC0003DMT400010993 | Potato | plastid | 6.54 | 8.44 |
| KRH05183 | Soybean | plastid | 6.44 | 8.38 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 1.91 | 8.37 |
| Os02t0186400-01 | Rice | plastid | 6.34 | 8.26 |
| EES06399 | Sorghum | plastid | 6.24 | 8.01 |
| VIT_04s0008g05610.t01 | Wine grape | plastid | 6.14 | 7.88 |
| TraesCS6D01G164600.1 | Wheat | plastid | 5.84 | 7.5 |
| TraesCS6A01G180500.1 | Wheat | plastid | 5.73 | 7.37 |
| CDX81487 | Canola | cytosol | 1.61 | 7.17 |
| HORVU6Hr1G036020.1 | Barley | plastid | 5.53 | 7.11 |
| CDX81488 | Canola | cytosol, nucleus, plastid | 0.8 | 5.23 |
| CDY61791 | Canola | nucleus | 0.1 | 0.65 |
Protein Annotations
| EnsemblPlants:CDX95298 | EnsemblPlantsGene:GSBRNA2T00100952001 | InterPro:DUF632 | ncoils:Coil | PANTHER:PTHR21450 | PANTHER:PTHR21450:SF8 |
| PFAM:PF04782 | ProteinID:CDX95298 | ProteinID:CDX95298.1 | SEG:seg | UniParc:UPI0004EC126A | MapMan:35.1 |
Description
BnaC04g28600D
Coordinates
chrLK031888:-:6583..9647
Molecular Weight (calculated)
114464.0 Da
IEP (calculated)
7.471
GRAVY (calculated)
-0.643
Length
994 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSIEVQMSY GEDPERWSEW IDAFTAAHNF TVFETRQFAY GFIEGDALSW YGDEISRYGF SSWDDLKVIV LNLFSTSVRQ EKEQLEQPSL IDSLKEISHL
101: LNRFKQRWKE KENAKKSQVE KTFESNEAKQ AESDGGDDLI LSRHHLRGTC FHFSTDRGFK FEQASWQIVT IMVAKSFKLN SSEFDTDEEM TTMNEDDKRK
201: VDTSTRNIQA KGSGHTDFRS VVERINSVSK KFVSNNSELC ELLEVSKVIH HQPLGSEVKE LASRVLGSSK NLTPCMLLLR RGLPQVNHDI SLFLMTIKKL
301: CLGEKKLHAE VTARERLRIL YEKGYSYLKN LDKNGAESSE IYEEKAEVKL QLSKASKSCV HMVEKGSLKV TQKVEEQIRI FRLPLRGYID THRSSVRALN
401: EWLNRNTMEE DDQTETEAPE IFKVCSERLR ETENVDDIKV LSAAEEMELR FRGLWFKQIE KEKRRLRIGK LCKELEKQKT ENYMCLLYVL LKGEHAAPAG
501: SAVERVKENL KVYLKVNRAI TEAEQEKIRN KIAELPKQKE KLQKMMSASG YEEKVPANMK EDNVMKLTKI LQEFDFFKKG SKENIQTENL ETDVKKSTKD
601: PKEKKKKKKG SKSDEVIFET SLIKHESLQK KLKQANVELA AKARELKHKL RERDKELAAV QSSSYLGERE LDQMSIEISI SHKKVSVAVS GFGNKSQFLS
701: QANEIVKRQE DEIHSLQRAL KEKEEVFEMS IAAKRLERIQ SLVQREKLER QRHMFQSESE GIRHEIEELE KLENLKVGLD DTPMAKMKLS KIERSWEKVS
801: VLKQKVITRD DELELQNEVS IVIAVLLPAW AGQSRDSVYI ILCVDKDEIL RVGFPGASRG LKADPSKVER VEELKIGDWA RVKVPDSSIS YGWSKPFSCS
901: VIDIEKVVPF HEGQEIVEGL SAHVTDRETF WKVSPGDAEM LSVREISDRV RSYRSLGSRP SDDWFSVGKD SIPMEFICSH SLTKYVDSVC DPRS
101: LNRFKQRWKE KENAKKSQVE KTFESNEAKQ AESDGGDDLI LSRHHLRGTC FHFSTDRGFK FEQASWQIVT IMVAKSFKLN SSEFDTDEEM TTMNEDDKRK
201: VDTSTRNIQA KGSGHTDFRS VVERINSVSK KFVSNNSELC ELLEVSKVIH HQPLGSEVKE LASRVLGSSK NLTPCMLLLR RGLPQVNHDI SLFLMTIKKL
301: CLGEKKLHAE VTARERLRIL YEKGYSYLKN LDKNGAESSE IYEEKAEVKL QLSKASKSCV HMVEKGSLKV TQKVEEQIRI FRLPLRGYID THRSSVRALN
401: EWLNRNTMEE DDQTETEAPE IFKVCSERLR ETENVDDIKV LSAAEEMELR FRGLWFKQIE KEKRRLRIGK LCKELEKQKT ENYMCLLYVL LKGEHAAPAG
501: SAVERVKENL KVYLKVNRAI TEAEQEKIRN KIAELPKQKE KLQKMMSASG YEEKVPANMK EDNVMKLTKI LQEFDFFKKG SKENIQTENL ETDVKKSTKD
601: PKEKKKKKKG SKSDEVIFET SLIKHESLQK KLKQANVELA AKARELKHKL RERDKELAAV QSSSYLGERE LDQMSIEISI SHKKVSVAVS GFGNKSQFLS
701: QANEIVKRQE DEIHSLQRAL KEKEEVFEMS IAAKRLERIQ SLVQREKLER QRHMFQSESE GIRHEIEELE KLENLKVGLD DTPMAKMKLS KIERSWEKVS
801: VLKQKVITRD DELELQNEVS IVIAVLLPAW AGQSRDSVYI ILCVDKDEIL RVGFPGASRG LKADPSKVER VEELKIGDWA RVKVPDSSIS YGWSKPFSCS
901: VIDIEKVVPF HEGQEIVEGL SAHVTDRETF WKVSPGDAEM LSVREISDRV RSYRSLGSRP SDDWFSVGKD SIPMEFICSH SLTKYVDSVC DPRS
001: MGIVASKGDS NTPLLNLCKE RKELIKAARD ARYHLARSHL LYFKSLLDFS KALKQFLHKD LVVIPYSDDD SSSSDIICSG SDSDSDTDSD SDSDSDCIVC
101: DQPQTAPLSN NDDQSQRKPV VGDGTCGASN NGQEGMEKSR EGLGFEGTQF VSDPSEDEMK SSQHPYDILG FYKSVYNMQQ CEIIELDHRD DEVESDGFRE
201: IREREGIPDL EPESDYNSLI RKNKKKNKKK KKKKNVRESS SVASEIDKRD VEANTCNGQV ADETDNSNEA CAQETENTPE IVTEEVTRSD EEVEVVARSD
301: EEVSDEAYES SSSCFSESSG SGLTDLRKVV ERINSICGKA AGNSEVSELL EVSRVVYHQP LGSQFKGFAS RVIGSSGTTT RDLVLKRRFR LDDLAVSLSM
401: TLEKLYMWEK KLHAEVTAEE KLRVAYEKAY KILNNLDQNG AESSELYEAE TLVKLHLSKV NVSVRAVESI SMRIHKIRDE ELSFQVIEII NGFKTMWRFL
501: AKCHHKQFRV IARSKSCVHI VENGSSSRKA TQQVEKQIRR YRESLKGYID AHRGFVKLLN EWLNRIIMED DETETEAPEI FRVCSEWLRE IENVDTIKVL
601: SVVEEMRLRF QGLGFKQVEE EKQRMRTERL SKELEKKTKE LEEIRGTRGS SPTSNMVEPE LLFLRESVTQ ETEKHERLIR ELNDAVSMSL QECMVPVFEA
701: LGDFCFANFK AYQNIVIVTT
101: DQPQTAPLSN NDDQSQRKPV VGDGTCGASN NGQEGMEKSR EGLGFEGTQF VSDPSEDEMK SSQHPYDILG FYKSVYNMQQ CEIIELDHRD DEVESDGFRE
201: IREREGIPDL EPESDYNSLI RKNKKKNKKK KKKKNVRESS SVASEIDKRD VEANTCNGQV ADETDNSNEA CAQETENTPE IVTEEVTRSD EEVEVVARSD
301: EEVSDEAYES SSSCFSESSG SGLTDLRKVV ERINSICGKA AGNSEVSELL EVSRVVYHQP LGSQFKGFAS RVIGSSGTTT RDLVLKRRFR LDDLAVSLSM
401: TLEKLYMWEK KLHAEVTAEE KLRVAYEKAY KILNNLDQNG AESSELYEAE TLVKLHLSKV NVSVRAVESI SMRIHKIRDE ELSFQVIEII NGFKTMWRFL
501: AKCHHKQFRV IARSKSCVHI VENGSSSRKA TQQVEKQIRR YRESLKGYID AHRGFVKLLN EWLNRIIMED DETETEAPEI FRVCSEWLRE IENVDTIKVL
601: SVVEEMRLRF QGLGFKQVEE EKQRMRTERL SKELEKKTKE LEEIRGTRGS SPTSNMVEPE LLFLRESVTQ ETEKHERLIR ELNDAVSMSL QECMVPVFEA
701: LGDFCFANFK AYQNIVIVTT
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q9LSQ7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.