CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90062
CDY15148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G52650.1	CDX90062	AT1G01800.1	21798944
AT5G52650.1	CDY15148	AT1G01800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029112.1-P	Field mustard	cytosol	74.58	99.44
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	85.59	92.66
AT5G52650.1	Thale cress	cytosol	68.64	90.5
CDY27840	Canola	cytosol	71.61	85.79
CDY49476	Canola	cytosol	71.61	81.64
CDX89397	Canola	extracellular	71.19	78.87
CDX92731	Canola	cytosol	71.61	74.12
Os01t0962600-01	Rice	plastid	55.93	73.74
Os04t0430100-01	Rice	nucleus	56.78	73.22
Os02t0549600-01	Rice	cytosol	56.78	73.22
GSMUA_Achr11P...	Banana	cytosol	41.95	72.26
Zm00001d011816_P001	Maize	plastid	54.66	72.07
EES10818	Sorghum	cytosol	55.93	71.74
Zm00001d025413_P001	Maize	extracellular, mitochondrion	54.24	71.51
EES04270	Sorghum	cytosol	53.81	70.95
Zm00001d003672_P001	Maize	plastid	54.24	70.72
Zm00001d042023_P001	Maize	plastid	53.39	70.39
CDY39734	Canola	cytosol	58.05	70.26
TraesCS2A01G302600.1	Wheat	cytosol	55.51	69.68
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	55.51	69.68
TraesCS2D01G301300.1	Wheat	cytosol	55.51	69.68
GSMUA_Achr2P08200_001	Banana	cytosol	40.25	69.34
CDX94419	Canola	mitochondrion	70.34	69.17
CDY35037	Canola	cytosol	58.47	67.65
CDY50187	Canola	endoplasmic reticulum, golgi	71.19	67.2
CDY66010	Canola	cytosol	72.46	66.54
CDY44470	Canola	cytosol	58.9	66.19
HORVU3Hr1G111760.2	Barley	mitochondrion	56.36	63.94
HORVU0Hr1G004700.1	Barley	mitochondrion	57.63	62.67
Zm00001d048305_P001	Maize	cytosol	38.98	62.59
GSMUA_AchrUn_...	Banana	extracellular	55.51	56.22
GSMUA_Achr8P08040_001	Banana	unclear	57.2	56.02
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	57.63	55.51
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	57.2	48.91
CDX67498	Canola	extracellular	61.86	31.26

Protein Annotations

EnsemblPlants:CDY51832	EnsemblPlantsGene:GSBRNA2T00004308001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDY51832	ProteinID:CDY51832.1
SEG:seg	UniParc:UPI0004EE4C0E	UniProt:A0A078IPH1	MapMan:17.1.3.1.11	:	:

Description

BnaC03g15440DBnaC03g15440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPH1]

Coordinates

chrLK033032:+:62263..63883

Molecular Weight (calculated)

26390.9 Da

IEP (calculated)

10.597

GRAVY (calculated)

-0.569

Length

236 amino acids

Sequence
(BLAST)

001: MKYAFITQKT LVFGILTKAN NQFQLCPKKK KLISFLIHTP SSFLPLRLYS KKARPHSSKM IMSEENRREI CKYLFKEGVL FAKKDFNLAK HPLIESVPNL
101: QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPIGR PFGGGPPGDR PRGPRFEGGD RPRYGDRDGY RRGGEGEKGG
201: APADYQPSFQ GSGGRPGFGR GAGGYSAAAP SGSGLP

Best Arabidopsis Sequence Match ( AT4G25740.2 )
(BLAST)

001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPRGGDE KGGAPADFQP SFQGGGGRPG FGRGAGGYSA AAPSGSGFP

Arabidopsis Description

RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.