Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY39879 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G41520.1 | CDY39879 | AT2G25000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025492.1-P | Field mustard | cytosol | 82.86 | 97.21 |
| CDY39734 | Canola | cytosol | 84.29 | 90.77 |
| AT5G41520.1 | Thale cress | cytosol | 73.81 | 86.11 |
| CDY35037 | Canola | cytosol | 80.95 | 83.33 |
| KRH27894 | Soybean | cytosol | 65.24 | 76.11 |
| KRH77585 | Soybean | nucleus | 65.24 | 75.69 |
| KRH41234 | Soybean | nucleus | 65.24 | 75.69 |
| PGSC0003DMT400075267 | Potato | cytosol | 64.76 | 75.56 |
| KRH59964 | Soybean | nucleus | 65.24 | 74.86 |
| Solyc01g099670.2.1 | Tomato | nucleus | 64.76 | 74.73 |
| Solyc12g096540.1.1 | Tomato | nucleus | 63.81 | 74.44 |
| PGSC0003DMT400063697 | Potato | cytosol | 64.29 | 74.18 |
| CDY27840 | Canola | cytosol | 66.67 | 71.07 |
| Os01t0962600-01 | Rice | plastid | 60.0 | 70.39 |
| Zm00001d011816_P001 | Maize | plastid | 59.52 | 69.83 |
| GSMUA_Achr11P... | Banana | cytosol | 45.24 | 69.34 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 58.57 | 68.72 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 44.76 | 68.61 |
| EES04270 | Sorghum | cytosol | 58.1 | 68.16 |
| Os04t0430100-01 | Rice | nucleus | 59.05 | 67.76 |
| Os02t0549600-01 | Rice | cytosol | 59.05 | 67.76 |
| Zm00001d003672_P001 | Maize | plastid | 58.1 | 67.4 |
| CDY49476 | Canola | cytosol | 66.19 | 67.15 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 60.48 | 66.84 |
| Zm00001d042023_P001 | Maize | plastid | 56.67 | 66.48 |
| EES10818 | Sorghum | cytosol | 58.1 | 66.3 |
| CDX89397 | Canola | extracellular | 65.71 | 64.79 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 66.19 | 63.76 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 56.67 | 63.3 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 56.67 | 63.3 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 56.67 | 63.3 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 60.0 | 60.58 |
| CDX92731 | Canola | cytosol | 65.71 | 60.53 |
| CDY51832 | Canola | plastid | 66.19 | 58.9 |
| CDX94419 | Canola | mitochondrion | 64.76 | 56.67 |
| CDY66010 | Canola | cytosol | 67.14 | 54.86 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 56.67 | 54.84 |
| GSMUA_AchrUn_... | Banana | extracellular | 60.48 | 54.51 |
| Zm00001d048305_P001 | Maize | cytosol | 38.1 | 54.42 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 64.76 | 54.4 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 60.0 | 52.28 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 60.0 | 51.43 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 60.95 | 46.38 |
| CDX67498 | Canola | extracellular | 82.86 | 37.26 |
Protein Annotations
| EnsemblPlants:CDY44470 | EnsemblPlantsGene:GSBRNA2T00080193001 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N |
| InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | ProteinID:CDY44470 | ProteinID:CDY44470.1 |
| SEG:seg | UniParc:UPI0004EEFD62 | UniProt:A0A078I0T4 | MapMan:17.1.3.1.11 | : | : |
Description
BnaCnng11230DBnaCnng11230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0T4]
Coordinates
chrLK032590:+:155250..157072
Molecular Weight (calculated)
22929.1 Da
IEP (calculated)
9.993
GRAVY (calculated)
-0.590
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNGDGKTPS HTQHADTFSV VSSTNLIAIM IMSEENRRAI SKYLFQEGVL FAKKDFNLAQ HPLVEGVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN
101: EGIDFLRTYL NLPSEIVPAT LKKQQKPLGR PMGDRPRGPP RSDGERRFGG DRDGYRGAPR AGGEFGDKSG APADYQPSFR APGAGSGSRP GFGRGAGGYG
201: AGPAAGSDLP
101: EGIDFLRTYL NLPSEIVPAT LKKQQKPLGR PMGDRPRGPP RSDGERRFGG DRDGYRGAPR AGGEFGDKSG APADYQPSFR APGAGSGSRP GFGRGAGGYG
201: AGPAAGSDLP
001: MIISETNRRE ISKYLFKEGV LFAKKDFNLP QHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP
Arabidopsis Description
RPS10B40S ribosomal protein S10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.