Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 nucleus: 27291164 endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27894 | Soybean | cytosol | 99.45 | 100.0 |
| KRH41234 | Soybean | nucleus | 93.92 | 93.92 |
| KRH59964 | Soybean | nucleus | 94.48 | 93.44 |
| Solyc01g099670.2.1 | Tomato | nucleus | 84.53 | 84.07 |
| Solyc12g096540.1.1 | Tomato | nucleus | 83.43 | 83.89 |
| PGSC0003DMT400063697 | Potato | cytosol | 83.98 | 83.52 |
| PGSC0003DMT400075267 | Potato | cytosol | 82.87 | 83.33 |
| GSMUA_Achr11P... | Banana | cytosol | 60.22 | 79.56 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 78.45 | 79.33 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 59.12 | 78.1 |
| Os04t0430100-01 | Rice | nucleus | 78.45 | 77.6 |
| Os02t0549600-01 | Rice | cytosol | 78.45 | 77.6 |
| Zm00001d003672_P001 | Maize | plastid | 76.8 | 76.8 |
| EES10818 | Sorghum | cytosol | 77.9 | 76.63 |
| Bra025492.1-P | Field mustard | cytosol | 75.69 | 76.54 |
| Os01t0962600-01 | Rice | plastid | 75.69 | 76.54 |
| AT5G41520.1 | Thale cress | cytosol | 75.69 | 76.11 |
| Zm00001d011816_P001 | Maize | plastid | 74.59 | 75.42 |
| Zm00001d042023_P001 | Maize | plastid | 72.38 | 73.18 |
| EES04270 | Sorghum | cytosol | 72.38 | 73.18 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 74.59 | 71.81 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 75.14 | 71.58 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 74.03 | 71.28 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 74.03 | 71.28 |
| CDY39734 | Canola | cytosol | 75.14 | 69.74 |
| CDY35037 | Canola | cytosol | 74.03 | 65.69 |
| CDY44470 | Canola | cytosol | 75.69 | 65.24 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 74.59 | 64.9 |
| KRH75198 | Soybean | cytosol, extracellular | 19.89 | 64.29 |
| Zm00001d048305_P001 | Maize | cytosol | 51.93 | 63.95 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 75.69 | 63.13 |
| GSMUA_AchrUn_... | Banana | extracellular | 79.01 | 61.37 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 81.77 | 60.41 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 79.56 | 59.75 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 82.32 | 53.99 |
| CDX67498 | Canola | extracellular | 75.14 | 29.12 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EMBL:ACUP02000680 | EnsemblPlantsGene:GLYMA_01G222100 | GO:GO:0000028 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0022627 | UniProt:I1JA95 | InterPro:IPR036388 | EnsemblPlants:KRH77585 |
| ProteinID:KRH77585 | ProteinID:KRH77585.1 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | InterPro:Rps10 |
| InterPro:S10_plectin_N | UniParc:UPI0002337605 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:55102003..55103917
Molecular Weight (calculated)
19946.7 Da
IEP (calculated)
10.102
GRAVY (calculated)
-0.764
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIPEKNRKE ICKYLFQEGV CFAKKDFNLA KHPEIDVPNL QVIKLMQSFK SREYVRETFA WMHYYWFLTN DGIEFLRTYL NLPSEIVPAT LKKQAKPAGR
101: PFGGPPGDRP RGPPRFDGER RFGGDRDGYR GGPRGPGGDF GDKGGAPADY RPSFGGGPGG RPGFGRGSGG YGAPTSSNIP S
101: PFGGPPGDRP RGPPRFDGER RFGGDRDGYR GGPRGPGGDF GDKGGAPADY RPSFGGGPGG RPGFGRGSGG YGAPTSSNIP S
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.