CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41520.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025492.1-P	Field mustard	cytosol	35.97	93.85
CDY35037	Canola	cytosol	37.69	86.27
CDY39734	Canola	cytosol	35.76	85.64
AT5G41520.1	Thale cress	cytosol	32.76	85.0
CDY44470	Canola	cytosol	37.26	82.86
KRH27894	Soybean	cytosol	29.12	75.56
KRH77585	Soybean	nucleus	29.12	75.14
PGSC0003DMT400075267	Potato	cytosol	28.91	75.0
KRH41234	Soybean	nucleus	28.91	74.59
Solyc12g096540.1.1	Tomato	nucleus	28.69	74.44
Solyc01g099670.2.1	Tomato	nucleus	28.91	74.18
PGSC0003DMT400063697	Potato	cytosol	28.91	74.18
KRH59964	Soybean	nucleus	28.91	73.77
CDY27840	Canola	cytosol	29.76	70.56
Os01t0962600-01	Rice	plastid	26.55	69.27
Zm00001d011816_P001	Maize	plastid	26.34	68.72
GSMUA_Achr11P...	Banana	cytosol	20.13	68.61
Zm00001d025413_P001	Maize	extracellular, mitochondrion	26.12	68.16
CDY49476	Canola	cytosol	29.98	67.63
GSMUA_Achr2P08200_001	Banana	cytosol	19.7	67.15
VIT_02s0025g00310.t01	Wine grape	cytosol	26.98	66.32
Zm00001d003672_P001	Maize	plastid	25.7	66.3
Os02t0549600-01	Rice	cytosol	25.91	66.12
Os04t0430100-01	Rice	nucleus	25.91	66.12
EES04270	Sorghum	cytosol	25.27	65.92
Zm00001d042023_P001	Maize	plastid	25.05	65.36
CDY56154	Canola	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	30.41	65.14
EES10818	Sorghum	cytosol	25.48	64.67
CDX89397	Canola	extracellular	29.12	63.85
TraesCS2D01G301300.1	Wheat	cytosol	25.27	62.77
TraesCS2B01G318500.1	Wheat	cytosol, golgi, unclear	25.27	62.77
TraesCS2A01G302600.1	Wheat	cytosol	25.27	62.77
CDX92731	Canola	cytosol	30.62	62.72
CDY51832	Canola	plastid	31.26	61.86
HORVU3Hr1G111760.2	Barley	mitochondrion	26.34	59.13
CDX94419	Canola	mitochondrion	29.34	57.08
CDY50187	Canola	endoplasmic reticulum, golgi	30.41	56.8
HORVU0Hr1G004700.1	Barley	mitochondrion	26.34	56.68
CDY66010	Canola	cytosol	31.05	56.42
Zm00001d048305_P001	Maize	cytosol	16.92	53.74
GSMUA_AchrUn_...	Banana	extracellular	26.77	53.65
GSMUA_Achr8P08040_001	Banana	unclear	27.19	52.7
GSMUA_Achr3P22420_001	Banana	endoplasmic reticulum, golgi, plasma membrane	27.41	52.24
GSMUA_Achr1P16990_001	Banana	cytosol, endoplasmic reticulum, nucleus	27.62	46.74

Protein Annotations

EnsemblPlants:CDX67498	EnsemblPlantsGene:GSBRNA2T00098612001	Gene3D:1.10.10.10	InterPro:IPR036388	InterPro:Rps10	InterPro:S10_plectin_N
InterPro:WH-like_DNA-bd_sf	PANTHER:PTHR12146	PANTHER:PTHR12146:SF7	PFAM:PF03501	ProteinID:CDX67498	ProteinID:CDX67498.1
SEG:seg	UniParc:UPI0004EF2D69	MapMan:17.1.3.1.11	:	:	:

Description

BnaA07g15380D

Coordinates

chrLK031787:-:587810..591369

Molecular Weight (calculated)

50830.0 Da

IEP (calculated)

7.147

GRAVY (calculated)

-0.512

Length

467 amino acids

Sequence
(BLAST)

001: MTFPSTGLAV LPLCDGEAPD PPPPPRSIAP PPSVTKTHDS STAAVHYSSY TWIPSACERC GALGHKEKRC LLPPTPHDSA PVTKESQVAK EDIPIVDIVH
101: LMQNSSITHV EHVEPNSRSH TTHQSLETSK KSVVTLPSED ASAGPITHSH EVHSSSCSQF DNNLPLLAVE KAAPTQSLNI MEDIPSHSIF LEDHRASETE
201: QQIDLRSPLT LDHQPFSMEP ETPLAYGKGI GFDVVGDSSS YTVTRGGRAI KLTQKVQEMG WMNISGRKNA VTNTARSHLL CCLIAIMIMS EENRRAISKY
301: LFQEGVLFAK KDFNLAQHPL VEGVPNLQVI KLMQSFKSKE YVRETFAWMH YYWFLTNEGI DFLRTYLNLP SEIVPATLKK QQKPLGRPMG DRPRGPPRSD
401: GERRSGDRDG YRGGQRSGGE FGDKSGAPAD YQPSFRGSGA GSRPGFGRGA GGYGAGPGPA AAGSDLP

Best Arabidopsis Sequence Match ( AT5G41520.1 )
(BLAST)

001: MIISETNRRE ISKYLFKEGV LFAKKDFNLP QHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIDFLRTY LNLPSEIVPA TLKKQQKPLG
101: RPFGGGGDRP RGPPRGDGER RFGDRDGYRG GPKSGGEYGD KAGAPADYQP GFRGGAGGAR QGFGRGAGGF GGGAAGSDLP

Arabidopsis Description

RPS10B40S ribosomal protein S10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.