Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G301300.1 | Wheat | cytosol | 82.03 | 94.68 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 76.96 | 88.83 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 76.96 | 88.83 |
| Os02t0549600-01 | Rice | cytosol | 73.27 | 86.89 |
| Os04t0430100-01 | Rice | nucleus | 73.27 | 86.89 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 70.51 | 85.47 |
| EES10818 | Sorghum | cytosol | 71.89 | 84.78 |
| Zm00001d003672_P001 | Maize | plastid | 69.59 | 83.43 |
| VIT_16s0050g01160.t01 | Wine grape | cytosol | 67.74 | 81.67 |
| PGSC0003DMT400075267 | Potato | cytosol | 66.82 | 80.56 |
| PGSC0003DMT400063697 | Potato | cytosol | 67.28 | 80.22 |
| Solyc12g096540.1.1 | Tomato | nucleus | 66.36 | 80.0 |
| Solyc01g099670.2.1 | Tomato | nucleus | 66.82 | 79.67 |
| GSMUA_Achr11P... | Banana | cytosol | 48.85 | 77.37 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 48.39 | 76.64 |
| AT4G25740.1 | Thale cress | cytosol | 62.21 | 76.27 |
| Bra019143.1-P | Field mustard | cytosol | 63.59 | 76.24 |
| KRH41234 | Soybean | nucleus | 63.59 | 76.24 |
| KRH27894 | Soybean | cytosol | 63.13 | 76.11 |
| KRH77585 | Soybean | nucleus | 63.13 | 75.69 |
| AT5G52650.1 | Thale cress | cytosol | 62.21 | 75.42 |
| KRH59964 | Soybean | nucleus | 63.59 | 75.41 |
| Bra013915.1-P | Field mustard | cytosol | 62.21 | 75.0 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 71.89 | 75.0 |
| Bra010448.1-P | Field mustard | cytosol | 62.21 | 74.59 |
| Bra029112.1-P | Field mustard | cytosol | 60.83 | 74.58 |
| Bra003118.1-P | Field mustard | cytosol | 60.37 | 73.18 |
| Zm00001d048305_P001 | Maize | cytosol | 48.85 | 72.11 |
| VIT_02s0025g00310.t01 | Wine grape | cytosol | 62.67 | 71.58 |
| CDY27840 | Canola | cytosol | 61.75 | 68.02 |
| CDY49476 | Canola | cytosol | 63.13 | 66.18 |
| AT5G41520.1 | Thale cress | cytosol | 54.84 | 66.11 |
| Bra025492.1-P | Field mustard | cytosol | 54.38 | 65.92 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 71.89 | 63.67 |
| GSMUA_AchrUn_... | Banana | extracellular | 67.74 | 63.09 |
| CDX89397 | Canola | extracellular | 61.75 | 62.91 |
| CDY56154 | Canola | endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 63.13 | 62.84 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 69.59 | 62.66 |
| CDX92731 | Canola | cytosol | 64.98 | 61.84 |
| CDY39734 | Canola | cytosol | 54.84 | 61.03 |
| CDY35037 | Canola | cytosol | 54.38 | 57.84 |
| CDY51832 | Canola | plastid | 62.67 | 57.63 |
| CDX94419 | Canola | mitochondrion | 63.13 | 57.08 |
| CDY44470 | Canola | cytosol | 54.84 | 56.67 |
| CDY50187 | Canola | endoplasmic reticulum, golgi | 64.06 | 55.6 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 69.12 | 54.35 |
| CDY66010 | Canola | cytosol | 61.75 | 52.14 |
| CDX67498 | Canola | extracellular | 56.68 | 26.34 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G004700.1 | EnsemblPlantsGene:HORVU0Hr1G004700 | Gene3D:1.10.10.10 | InterPro:IPR036388 | InterPro:Rps10 | InterPro:S10_plectin_N |
| InterPro:WH-like_DNA-bd_sf | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | PFAM:PF03501 | SEG:seg | UniParc:UPI000B468578 |
| UniProt:A0A287DVR0 | MapMan:17.1.3.1.11 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:27157663..27160063
Molecular Weight (calculated)
23738.2 Da
IEP (calculated)
10.534
GRAVY (calculated)
-0.759
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: GFFVSPSRRR LPLPSRRTWE LDLPAPPTMI ISKKNRNEIC KYLFQEGVLY AKKDYNLAKH PQIDVPNLQV IKLMQSFKSK EYVRETFSWQ HYYWYLTNDG
101: IEFLRNFLNL PSEIVPATLK KSARPPGRPL GSGPPGDRPR GPPRFEGDRP RYGDRDGYRG GPRGAPGDFG GEKGGAPADF QPSFRSSGGG GFGRGGGAGG
201: FGRGGGGAGG FGASPME
101: IEFLRNFLNL PSEIVPATLK KSARPPGRPL GSGPPGDRPR GPPRFEGDRP RYGDRDGYRG GPRGAPGDFG GEKGGAPADF QPSFRSSGGG GFGRGGGAGG
201: FGRGGGGAGG FGASPME
001: MIISENNRRE ICKYLFKEGV CFAKKDFNLP KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
101: PFGGPPGDRQ RGPPRSDGDR PRFGDRDGYR GGPRGGDEKG GAPADFQPSF QGGGGRPGFG RGAGGYSAAA PSGSGFP
Arabidopsis Description
RPS10A40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.