Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra032567.1-P | |
| Bra032573.1-P | |
| Bra033230.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G52650.1 | Bra032567.1-P | AT1G01800.1 | 21798944 |
| AT5G52650.1 | Bra032573.1-P | AT1G01800.1 | 21798944 |
| AT5G52650.1 | Bra033230.1-P | AT1G01800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029112.1-P | Field mustard | cytosol | 91.62 | 92.66 |
| Bra019143.1-P | Field mustard | cytosol | 89.39 | 88.4 |
| AT5G52650.1 | Thale cress | cytosol | 88.27 | 88.27 |
| Bra010448.1-P | Field mustard | cytosol | 88.83 | 87.85 |
| Bra013915.1-P | Field mustard | cytosol | 87.71 | 87.22 |
| CDY27840 | Canola | cytosol | 93.3 | 84.77 |
| Bra025492.1-P | Field mustard | cytosol | 73.74 | 73.74 |
| Os01t0962600-01 | Rice | plastid | 73.18 | 73.18 |
| Os02t0549600-01 | Rice | cytosol | 73.74 | 72.13 |
| Os04t0430100-01 | Rice | nucleus | 73.74 | 72.13 |
| Zm00001d011816_P001 | Maize | plastid | 71.51 | 71.51 |
| GSMUA_Achr11P... | Banana | cytosol | 54.19 | 70.8 |
| EES04270 | Sorghum | cytosol | 70.39 | 70.39 |
| EES10818 | Sorghum | cytosol | 72.07 | 70.11 |
| Zm00001d042023_P001 | Maize | plastid | 69.83 | 69.83 |
| Zm00001d025413_P001 | Maize | extracellular, mitochondrion | 69.83 | 69.83 |
| TraesCS2B01G318500.1 | Wheat | cytosol, golgi, unclear | 72.63 | 69.15 |
| TraesCS2A01G302600.1 | Wheat | cytosol | 72.63 | 69.15 |
| TraesCS2D01G301300.1 | Wheat | cytosol | 72.63 | 69.15 |
| Zm00001d003672_P001 | Maize | plastid | 69.83 | 69.06 |
| GSMUA_Achr2P08200_001 | Banana | cytosol | 51.96 | 67.88 |
| HORVU3Hr1G111760.2 | Barley | mitochondrion | 73.74 | 63.46 |
| Zm00001d048305_P001 | Maize | cytosol | 49.72 | 60.54 |
| HORVU0Hr1G004700.1 | Barley | mitochondrion | 73.18 | 60.37 |
| GSMUA_AchrUn_... | Banana | extracellular | 72.07 | 55.36 |
| GSMUA_Achr8P08040_001 | Banana | unclear | 73.74 | 54.77 |
| GSMUA_Achr3P22420_001 | Banana | endoplasmic reticulum, golgi, plasma membrane | 74.86 | 54.69 |
| GSMUA_Achr1P16990_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 73.74 | 47.83 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:17.1.3.1.11 | EnsemblPlantsGene:Bra003118 | EnsemblPlants:Bra003118.1 | EnsemblPlants:Bra003118.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0016020 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030312 | GO:GO:0042788 |
| InterPro:IPR036388 | UniProt:M4CFY6 | PFAM:PF03501 | PANTHER:PTHR12146 | PANTHER:PTHR12146:SF7 | InterPro:Rps10 |
| InterPro:S10_plectin_N | UniParc:UPI0002543739 | InterPro:WH-like_DNA-bd_sf | SEG:seg | : | : |
Description
AT4G25740 (E=2e-046) | 40S ribosomal protein S10 (RPS10A)
Coordinates
chrA10:-:4987160..4988716
Molecular Weight (calculated)
19812.6 Da
IEP (calculated)
9.490
GRAVY (calculated)
-0.580
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MIISEENRRE ICKYLFEEGV YFAKKDFNLA KHPLIESVPN LQVIKLMQSF KSKEYVRETF AWMHYYWFLT NEGIEFLRTH LNLPSDVVLA TLKKSAKPIG
101: RPFGGPPGDR PRGPRFEGGD RPRYGDRDGY RAGPCGGEGE KGGAPADYQL FFQGSGGRPG FGRGTGGYGV AAPSGSGLP
101: RPFGGPPGDR PRGPRFEGGD RPRYGDRDGY RAGPCGGEGE KGGAPADYQL FFQGSGGRPG FGRGTGGYGV AAPSGSGLP
001: MIISEANRKE ICKYLFKEGV CFAKKDFNLA KHPLIDVPNL QVIKLMQSFK SKEYVRETFA WMHYYWFLTN EGIEFLRTYL NLPSDVVPAT LKKSAKPGGR
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
101: PFGGPPGDRS RGPRHEGGDR PRFGDRDGYR AGPRAGGEFG GEKGGAPADY QPSFQGSGRG FGRGAGGYSA AAPSGSGLP
Arabidopsis Description
RPS10C40S ribosomal protein S10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTF2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.