Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51271 | Canola | nucleus | 89.05 | 92.27 |
| CDY32739 | Canola | nucleus | 64.18 | 66.84 |
| CDX88648 | Canola | nucleus | 70.15 | 66.51 |
| AT5G57910.1 | Thale cress | nucleus | 68.16 | 66.18 |
| CDY11841 | Canola | nucleus | 69.65 | 65.73 |
| CDY02778 | Canola | nucleus | 63.68 | 65.64 |
| CDY28197 | Canola | nucleus | 37.81 | 36.72 |
| CDX68674 | Canola | nucleus | 37.81 | 36.54 |
| CDY39225 | Canola | nucleus | 34.83 | 35.0 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 38.81 | 33.05 |
| KRH03036 | Soybean | nucleus | 40.8 | 31.91 |
| KRH72318 | Soybean | cytosol | 39.8 | 30.89 |
| Solyc12g009970.1.1 | Tomato | nucleus | 36.82 | 25.0 |
| Solyc07g005690.2.1 | Tomato | cytosol | 36.32 | 24.5 |
| PGSC0003DMT400020258 | Potato | nucleus | 33.83 | 23.05 |
| PGSC0003DMT400028944 | Potato | cytosol | 34.33 | 23.0 |
Protein Annotations
| EnsemblPlants:CDY57462 | EnsemblPlantsGene:GSBRNA2T00022248001 | ncoils:Coil | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | ProteinID:CDY57462 |
| ProteinID:CDY57462.1 | SEG:seg | UniParc:UPI0004EEB23F | UniProt:A0A078IYV1 | MapMan:35.2 | : |
Description
BnaC09g33490DBnaC09g33490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYV1]
Coordinates
chrLK033578:-:7619..9076
Molecular Weight (calculated)
23339.8 Da
IEP (calculated)
10.835
GRAVY (calculated)
-1.268
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRTPPNPNP FEDPKVRLRH HSLMQDYQEL HMDTEAMRKK IQTMRARKAT LIAEVRFLRR RYRHLRQDQP VMHPPDVKKG RGRSKSKTQV SSPNKRSEAE
101: TKHVTLPDLN HSVNETKTSL EKRVPLFDLN QISGEEEEER EAMNNERTRV QESSSCTRKS STEMPQQQKE MKLSSCRNGG NGSNKRKVSW QDPVAAAALR
201: V
101: TKHVTLPDLN HSVNETKTSL EKRVPLFDLN QISGEEEEER EAMNNERTRV QESSSCTRKS STEMPQQQKE MKLSSCRNGG NGSNKRKVSW QDPVAAAALR
201: V
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
Arabidopsis Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.