Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005056.1-P | |
| Bra011328.1-P | |
| Bra015543.1-P | |
| Bra017974.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G57910.1 | Bra015543.1-P | AT1G07000.1 | 21798944 |
| AT5G57910.1 | Bra017974.1-P | AT3G49580.1 | 21798944 |
| AT5G57910.1 | Bra011328.1-P | AT4G32190.1 | 21798944 |
| AT5G57910.1 | Bra005056.1-P | AT5G25070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32739 | Canola | nucleus | 86.76 | 91.71 |
| CDY02778 | Canola | nucleus | 85.29 | 89.23 |
| Bra002685.1-P | Field mustard | nucleus | 63.73 | 67.01 |
| Bra006793.1-P | Field mustard | mitochondrion, nucleus | 53.43 | 66.46 |
| AT5G57910.1 | Thale cress | nucleus | 66.67 | 65.7 |
| Bra011204.1-P | Field mustard | nucleus | 36.76 | 36.23 |
| Bra024058.1-P | Field mustard | nucleus | 33.33 | 33.5 |
| KRH03036 | Soybean | nucleus | 40.2 | 31.91 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 36.27 | 31.36 |
| KRH72318 | Soybean | cytosol | 38.24 | 30.12 |
| Bra041159.1-P | Field mustard | cytosol | 17.16 | 26.72 |
| Solyc12g009970.1.1 | Tomato | nucleus | 33.33 | 22.97 |
| Solyc07g005690.2.1 | Tomato | cytosol | 32.35 | 22.15 |
| PGSC0003DMT400020258 | Potato | nucleus | 30.88 | 21.36 |
| PGSC0003DMT400028944 | Potato | cytosol | 31.37 | 21.33 |
Protein Annotations
Description
AT5G57910 (E=1e-043) | unknown protein
Coordinates
chrA02:+:6571476..6572666
Molecular Weight (calculated)
23742.0 Da
IEP (calculated)
9.799
GRAVY (calculated)
-1.209
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRAHGDFTP SNSNPFEDPK IRFRHHSLFQ DYQELHMDTE AMRKRLETMQ ERKATLMAEV RFLRRRYRHL RQVSQPVMHP PDVNKGRGRS NGGKKSKRQL
101: IQVEVSPDKT SEAETKHVSL PDLNHSGEAH HDETKTKKVP LFDLNQISGE EEEEMNNSEE RMRVEESHSC KRMSSIEMLS CRNGGDGSHK RKSSWQDPVA
201: ALRV
101: IQVEVSPDKT SEAETKHVSL PDLNHSGEAH HDETKTKKVP LFDLNQISGE EEEEMNNSEE RMRVEESHSC KRMSSIEMLS CRNGGDGSHK RKSSWQDPVA
201: ALRV
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
Arabidopsis Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.