CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

cytosol 3
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039956_P001	Maize	peroxisome	88.02	88.02
Zm00001d039952_P002	Maize	peroxisome	84.1	83.91
Zm00001d039947_P002	Maize	plasma membrane	84.56	78.76
KXG31952	Sorghum	cytosol	72.12	75.42
KXG31861	Sorghum	cytosol, peroxisome, plastid	74.19	73.18
KXG31860	Sorghum	cytosol, peroxisome, plastid	73.5	73.17
OQU75613	Sorghum	cytosol, peroxisome, plastid	73.5	73.17
KXG31859	Sorghum	peroxisome	73.04	72.54
Zm00001d039951_P001	Maize	nucleus	50.92	71.99
KXG31858	Sorghum	peroxisome	71.43	71.76
EES02456	Sorghum	cytosol, peroxisome, plastid	73.96	70.86
KXG31863	Sorghum	plastid	58.06	67.38
EER96600	Sorghum	peroxisome	66.36	66.21
EES02467	Sorghum	cytosol, peroxisome, plastid	65.44	63.53
Os08t0543400-02	Rice	cytosol, plasma membrane	62.9	61.76
Os11t0182200-01	Rice	cytosol	60.37	58.61
TraesCS6D01G241700.1	Wheat	cytosol	57.83	57.31
OQU86302	Sorghum	mitochondrion	32.26	57.14
TraesCS6B01G288300.1	Wheat	peroxisome	57.14	56.75
TraesCS6A01G260900.1	Wheat	peroxisome	56.91	56.39
HORVU6Hr1G066420.1	Barley	cytosol, peroxisome, plastid	56.91	54.65
HORVU0Hr1G023570.1	Barley	cytosol, peroxisome, plastid	56.91	54.29
TraesCS2A01G040800.1	Wheat	cytosol	55.3	53.1
Os08t0205000-00	Rice	cytosol	20.05	52.1
HORVU2Hr1G112120.3	Barley	mitochondrion	27.65	48.39
EER98920	Sorghum	cytosol	47.93	48.04
EES15064	Sorghum	cytosol	47.0	46.05
EES15065	Sorghum	cytosol, peroxisome, plastid	45.62	44.39
EES07672	Sorghum	cytosol	44.24	42.57
TraesCS2A01G040600.1	Wheat	cytosol	43.09	42.4
EER98918	Sorghum	cytosol, peroxisome, plastid	42.63	40.84
KXG19490	Sorghum	cytosol	40.78	40.69
EER87979	Sorghum	cytosol	40.78	40.69
EER89344	Sorghum	cytosol	40.78	40.5
EES11073	Sorghum	mitochondrion	37.79	37.19
EES05411	Sorghum	cytosol	36.64	35.49
OQU91195	Sorghum	cytosol	27.88	26.42
OQU83825	Sorghum	peroxisome, plastid	23.73	23.25
OQU89853	Sorghum	cytosol	23.5	23.02
EES09214	Sorghum	cytosol, peroxisome, plastid	23.27	22.3
EES10710	Sorghum	cytosol	21.43	20.31
EER88164	Sorghum	cytosol	15.21	19.02

Protein Annotations

EnsemblPlants:KXG31953	EnsemblPlantsGene:SORBI_3003G082900	EntrezGene:8061352	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31642
PANTHER:PTHR31642:SF16	PFAM:PF02458	ProteinID:EES02538.1	ProteinID:KXG31953	ProteinID:KXG31953.1	RefSeq:XP_002457418.1
SEG:seg	unigene:Sbi.14117	UniParc:UPI0001A84BC2	UniProt:C5XQT0	MapMan:50.2.3	:

Description

hypothetical protein

Coordinates

chr3:-:7101247..7103516

Molecular Weight (calculated)

47331.9 Da

IEP (calculated)

5.482

GRAVY (calculated)

0.026

Length

434 amino acids

Sequence
(BLAST)

001: MNIMDSEVVQ VVESSFVVPN EPTPREGLWL SPLDLILANR GHTPTVYLYS SSNVAAGDDG FFDVARLKEA MAKALVAFYP LAGRLGVDNH GRAEITCNGE
101: GALFVVARAD LTVDDIKDDF KPSPELRRLF VPRIEPASVI LAIQVTFLKC GGVVLGTALH HAAIDASSAF HFFQTWSAIS KHGDGATVEL PCHDRTLLRA
201: RSPPTVHPDA LSRFYPKLTF SDPSGPLAVE FFAISKDQVA SLKRLCGGTS TFCAMSALVW QCALIARRLP PDSETRLTFP ANIRRRVRPP LPDRYFGNAL
301: VRLGVTGAVR DVASEDLASV AGRIKGAIDR MDDELVRSAV DYWEMTELDS RPAKGTLLET DLQIISWLGM PMYDADFGWG KPGVMSRAES IRGGFVYLMS
401: DGPADDAGAG GVRVLMCMEA ANINELERLL YEKL

Best Arabidopsis Sequence Match ( AT1G27620.1 )
(BLAST)

001: MQELPDCLYE ENQPTLITPL SPTPNHSLYL SNLDDHHFLR FSIKYLYLFQ KSISPLTLKD SLSRVLVDYY PFAGRIRVSD EGSKLEVDCN GEGAVFAEAF
101: MDITCQDFVQ LSPKPNKSWR KLLFKVQAQS FLDIPPLVIQ VTYLRCGGMI LCTAINHCLC DGIGTSQFLH AWAHATTSQA HLPTRPFHSR HVLDPRNPPR
201: VTHSHPGFTR TTTVDKSSTF DISKYLQSQP LAPATLTFNQ SHLLRLKKTC APSLKCTTFE ALAANTWRSW AQSLDLPMTM LVKLLFSVNM RKRLTPELPQ
301: GYYGNGFVLA CAESKVQDLV NGNIYHAVKS IQEAKSRITD EYVRSTIDLL EDKTVKTDVS CSLVISQWAK LGLEELDLGG GKPMYMGPLT SDIYCLFLPV
401: ASDNDAIRVQ MSLPEEVVKR LEYCMVKFLD GKDNEDENSR AC

Arabidopsis Description

At1g27620 [Source:UniProtKB/TrEMBL;Acc:Q9S808]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.