Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039956_P001 | Maize | peroxisome | 84.33 | 90.55 |
| Zm00001d039952_P002 | Maize | peroxisome | 84.33 | 90.34 |
| KXG31953 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 78.76 | 84.56 |
| Zm00001d039951_P001 | Maize | nucleus | 48.71 | 73.94 |
| KXG31952 | Sorghum | cytosol | 62.23 | 69.88 |
| Zm00001d039837_P002 | Maize | peroxisome | 62.66 | 68.38 |
| Zm00001d039840_P001 | Maize | peroxisome | 63.73 | 67.96 |
| Zm00001d039833_P001 | Maize | cytosol | 63.52 | 66.22 |
| Os08t0543400-02 | Rice | cytosol, plasma membrane | 56.22 | 59.28 |
| TraesCS6B01G288300.1 | Wheat | peroxisome | 51.93 | 55.38 |
| TraesCS6A01G260900.1 | Wheat | peroxisome | 51.93 | 55.25 |
| TraesCS6D01G241700.1 | Wheat | cytosol | 51.93 | 55.25 |
| Os11t0182200-01 | Rice | cytosol | 52.58 | 54.81 |
| HORVU6Hr1G066420.1 | Barley | cytosol, peroxisome, plastid | 52.36 | 53.98 |
| HORVU0Hr1G023570.1 | Barley | cytosol, peroxisome, plastid | 52.36 | 53.63 |
| Zm00001d005607_P001 | Maize | cytosol | 50.43 | 53.53 |
| TraesCS2A01G040800.1 | Wheat | cytosol | 49.57 | 51.11 |
| Os08t0205000-00 | Rice | cytosol | 17.17 | 47.9 |
| HORVU2Hr1G112120.3 | Barley | mitochondrion | 25.11 | 47.18 |
| Zm00001d032148_P001 | Maize | cytosol | 43.13 | 46.64 |
| Zm00001d020530_P001 | Maize | cytosol, extracellular | 41.2 | 44.24 |
| Zm00001d003129_P001 | Maize | mitochondrion | 13.95 | 44.22 |
| Zm00001d018367_P001 | Maize | cytosol | 40.77 | 42.99 |
| Zm00001d050455_P001 | Maize | plastid | 41.42 | 40.8 |
| TraesCS2A01G040600.1 | Wheat | cytosol | 37.98 | 40.14 |
| Zm00001d020528_P001 | Maize | cytosol | 37.55 | 39.41 |
| Zm00001d045091_P001 | Maize | cytosol | 36.05 | 38.8 |
| Zm00001d045092_P001 | Maize | cytosol | 36.48 | 38.64 |
| Zm00001d037073_P001 | Maize | cytosol | 36.05 | 38.36 |
| Zm00001d041341_P001 | Maize | cytosol | 32.4 | 37.66 |
| Zm00001d017186_P001 | Maize | extracellular | 33.05 | 34.53 |
| Zm00001d033521_P001 | Maize | cytosol | 24.68 | 25.33 |
| Zm00001d048870_P001 | Maize | peroxisome | 23.39 | 23.96 |
| Zm00001d027948_P001 | Maize | cytosol | 22.53 | 23.7 |
| Zm00001d007606_P001 | Maize | peroxisome | 23.61 | 23.55 |
| Zm00001d021324_P001 | Maize | cytosol | 22.32 | 23.42 |
| Zm00001d027946_P001 | Maize | cytosol | 22.1 | 23.25 |
| Zm00001d052449_P001 | Maize | cytosol, peroxisome, plastid | 22.53 | 23.03 |
| Zm00001d006263_P001 | Maize | cytosol | 21.89 | 22.92 |
| Zm00001d030542_P001 | Maize | plastid | 21.67 | 22.9 |
| Zm00001d021329_P001 | Maize | cytosol | 21.89 | 22.72 |
| Zm00001d022592_P001 | Maize | cytosol | 21.03 | 22.02 |
| Zm00001d006260_P001 | Maize | cytosol | 18.67 | 21.43 |
| Zm00001d048872_P001 | Maize | cytosol | 21.24 | 21.43 |
| Zm00001d048871_P001 | Maize | peroxisome | 21.24 | 21.34 |
| Zm00001d003856_P001 | Maize | cytosol | 19.31 | 20.09 |
| Zm00001d030540_P001 | Maize | plastid | 10.3 | 17.58 |
Protein Annotations
| EnsemblPlants:Zm00001d039947_P002 | EnsemblPlants:Zm00001d039947_T002 | EnsemblPlantsGene:Zm00001d039947 | Gene3D:3.30.559.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0016740 | GO:GO:0016747 | InterPro:CAT-like_dom_sf | InterPro:IPR023213 | InterPro:Transferase | PANTHER:PTHR31642 |
| PANTHER:PTHR31642:SF16 | PFAM:PF02458 | ProteinID:ONM30206.1 | SEG:seg | UniParc:UPI000845168F | UniProt:A0A1D6MLW9 |
| MapMan:50.2.3 | : | : | : | : | : |
Description
Spermidine hydroxycinnamoyl transferase
Coordinates
chr3:-:20216309..20227371
Molecular Weight (calculated)
50338.6 Da
IEP (calculated)
6.191
GRAVY (calculated)
0.106
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHGKLKFLA YRRMQPEEIF LASVASAGAV STSSNIMDSE VVHVVESSFV VPSEPTPSEG LSLSPLDLVL PSRGHTPTVY LYSPSDVAAA DGFFDVARLK
101: EAMAKTLVAF YPLAGRLGVN NDGRVEITCT GEGALFVVAH ADLSVGDIED DFRPSPELRR LFVPCVEPAS IILAIQVTFL KFGGVVLGTA LHHTASDASS
201: AFHFFQTWSA LCKYGDRATV ELPCHDRTLL RARSPPTVHP DALSRFYPKL TFSDDPLGSG PLAIEVFAIS KDQVASLKRL CGGTSTFCAI GALVWQCALV
301: VRRLPPDAEA RLTFPANVRR RVRPPLPSHY FGNALVRLGA TGAVRDVASE ALASVAGRIK DAVDRVDDEL VRSAVDYYEM TEMDSRPVKG TLPETDLQII
401: SWLGMPMYDV DFGWGKPAVM SRADSVRGGL VYLTSDGPTG GGGVRVLMCM EAANMKELER LLYAKL
101: EAMAKTLVAF YPLAGRLGVN NDGRVEITCT GEGALFVVAH ADLSVGDIED DFRPSPELRR LFVPCVEPAS IILAIQVTFL KFGGVVLGTA LHHTASDASS
201: AFHFFQTWSA LCKYGDRATV ELPCHDRTLL RARSPPTVHP DALSRFYPKL TFSDDPLGSG PLAIEVFAIS KDQVASLKRL CGGTSTFCAI GALVWQCALV
301: VRRLPPDAEA RLTFPANVRR RVRPPLPSHY FGNALVRLGA TGAVRDVASE ALASVAGRIK DAVDRVDDEL VRSAVDYYEM TEMDSRPVKG TLPETDLQII
401: SWLGMPMYDV DFGWGKPAVM SRADSVRGGL VYLTSDGPTG GGGVRVLMCM EAANMKELER LLYAKL
001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI
Arabidopsis Description
HSTShikimate O-hydroxycinnamoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI78]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.