Factsheet for Zm00001d039833_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039840_P001	Maize	peroxisome	82.55	84.44
KXG31858	Sorghum	peroxisome	78.3	81.02
Zm00001d039837_P002	Maize	peroxisome	76.29	79.86
Zm00001d039956_P001	Maize	peroxisome	68.23	70.28
Zm00001d039952_P002	Maize	peroxisome	67.34	69.2
Zm00001d039947_P002	Maize	plasma membrane	66.22	63.52
Zm00001d039951_P001	Maize	nucleus	40.27	58.63
Os08t0543400-02	Rice	cytosol, plasma membrane	55.48	56.11
Zm00001d005607_P001	Maize	cytosol	52.13	53.08
TraesCS6D01G241700.1	Wheat	cytosol	51.9	52.97
TraesCS6B01G288300.1	Wheat	peroxisome	51.68	52.86
Os11t0182200-01	Rice	cytosol	52.35	52.35
TraesCS6A01G260900.1	Wheat	peroxisome	51.01	52.05
HORVU6Hr1G066420.1	Barley	cytosol, peroxisome, plastid	51.68	51.11
HORVU0Hr1G023570.1	Barley	cytosol, peroxisome, plastid	51.68	50.77
Os08t0205000-00	Rice	cytosol	18.79	50.3
TraesCS2A01G040800.1	Wheat	cytosol	50.34	49.78
HORVU2Hr1G112120.3	Barley	mitochondrion	25.5	45.97
Zm00001d032148_P001	Maize	cytosol	42.06	43.62
Zm00001d020530_P001	Maize	cytosol, extracellular	40.04	41.24
Zm00001d003129_P001	Maize	mitochondrion	13.42	40.82
Zm00001d018367_P001	Maize	cytosol	39.15	39.59
Zm00001d020528_P001	Maize	cytosol	38.7	38.96
TraesCS2A01G040600.1	Wheat	cytosol	38.26	38.78
Zm00001d050455_P001	Maize	plastid	40.49	38.27
Zm00001d037073_P001	Maize	cytosol	36.91	37.67
Zm00001d045092_P001	Maize	cytosol	36.91	37.5
Zm00001d045091_P001	Maize	cytosol	36.02	37.18
Zm00001d041341_P001	Maize	cytosol	31.32	34.91
Zm00001d017186_P001	Maize	extracellular	33.78	33.86
Zm00001d033521_P001	Maize	cytosol	25.5	25.11
Zm00001d007606_P001	Maize	peroxisome	24.83	23.77
Zm00001d021324_P001	Maize	cytosol	23.04	23.2
Zm00001d048870_P001	Maize	peroxisome	23.49	23.08
Zm00001d052449_P001	Maize	cytosol, peroxisome, plastid	23.27	22.81
Zm00001d048872_P001	Maize	cytosol	23.49	22.73
Zm00001d021329_P001	Maize	cytosol	22.6	22.49
Zm00001d006263_P001	Maize	cytosol	22.37	22.47
Zm00001d027948_P001	Maize	cytosol	21.7	21.9
Zm00001d027946_P001	Maize	cytosol	21.7	21.9
Zm00001d022592_P001	Maize	cytosol	21.7	21.8
Zm00001d006260_P001	Maize	cytosol	19.69	21.67
Zm00001d048871_P001	Maize	peroxisome	21.25	20.47
Zm00001d030542_P001	Maize	plastid	19.91	20.18
Zm00001d003856_P001	Maize	cytosol	19.69	19.64
Zm00001d030540_P001	Maize	plastid	9.4	15.38

Protein Annotations

EMBL:BT055288	EnsemblPlants:Zm00001d039833_P001	EnsemblPlants:Zm00001d039833_T001	EnsemblPlantsGene:Zm00001d039833	EntrezGene:100279986	Gene3D:3.30.559.10
GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213
InterPro:Transferase	PANTHER:PTHR31642	PANTHER:PTHR31642:SF16	PFAM:PF02458	ProteinID:ONM29984.1	SEG:seg
UniParc:UPI0001917830	UniProt:B8A146	MapMan:50.2.3	:	:	:

Description

Spermidine hydroxycinnamoyl transferase

Coordinates

chr3:-:16203110..16205064

Molecular Weight (calculated)

49109.5 Da

IEP (calculated)

8.408

GRAVY (calculated)

-0.018

Length

447 amino acids

Sequence
(BLAST)

001: MESMDLKVQV VESSFIAPSE PTPRKGLWLS SLDILVANIG HTPTIYLYSS NDAAAADFFD VGRLKKAMAK ALVPFYPLAG RLGNNSDDGR TEISCNGEGA
101: LFVVAHADDE LTIDDVKKLK PSPELRRLFV PRIEPSSIML AIQVTFLKSG GVVLGTALHH AAIDASSAFH FFQTWSAFCK HGDRAAVELP CHDRTLLRAR
201: SPPTVHPGTL LTLQPRLTLS DLEGPLAIEV FTISKDQVAS LKHLCGGTST FCAVSALIWQ CTCVARRLPP DSQVRMVFPA ELRRRMRPPL PNHYFGNAVF
301: RLYVTGAAGD IGTAALGSVA TRIKGAIKRL DDELVRSAID YFENEKAAEM NKRRALRGTL PKTFLNITSW LGRPQYDADF GWGKPQFMSL AESFCGGFVH
401: LMNDERTTYY GGATGDVRMI VCMEAVDMKE LGRLLYVKLK QAACAMH

Best Arabidopsis Sequence Match ( AT2G19070.1 )
(BLAST)

001: MAPITFRKSY TIVPAEPTWS GRFPLAEWDQ VGTITHIPTL YFYDKPSESF QGNVVEILKT SLSRVLVHFY PMAGRLRWLP RGRFELNCNA EGVEFIEAES
101: EGKLSDFKDF SPTPEFENLM PQVNYKNPIE TIPLFLAQVT KFKCGGISLS VNVSHAIVDG QSALHLISEW GRLARGEPLE TVPFLDRKIL WAGEPLPPFV
201: SPPKFDHKEF DQPPFLIGET DNVEERKKKT IVVMLPLSTS QLQKLRSKAN GSKHSDPAKG FTRYETVTGH VWRCACKARG HSPEQPTALG ICIDTRSRME
301: PPLPRGYFGN ATLDVVAAST SGELISNELG FAASLISKAI KNVTNEYVMI GIEYLKNQKD LKKFQDLHAL GSTEGPFYGN PNLGVVSWLT LPMYGLDFGW
401: GKEFYTGPGT HDFDGDSLIL PDQNEDGSVI LATCLQVAHM EAFKKHFYED I

Arabidopsis Description

SHTSpermidine hydroxycinnamoyl transferase [Source:UniProtKB/Swiss-Prot;Acc:O64470]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.