CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05411
EES11073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	EES05411	AT5G48930.1	21798944
AT5G14700.1	EES11073	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22093	Sorghum	cytosol	33.33	91.26
Zm00001d044104_P001	Maize	cytosol	96.45	73.12
Zm00001d011446_P001	Maize	cytosol	94.33	69.82
Os01t0639200-01	Rice	cytosol	88.65	65.96
HORVU3Hr1G057200.1	Barley	cytosol	86.88	65.51
TraesCS3B01G259000.1	Wheat	cytosol, peroxisome, plastid	86.17	65.32
TraesCS3A01G229700.1	Wheat	cytosol	85.46	65.31
TraesCS3D01G223500.1	Wheat	cytosol	84.4	63.81
EES18736	Sorghum	cytosol	80.85	62.13
KRH56594	Soybean	cytosol	47.16	49.63
KRG93279	Soybean	cytosol	36.52	48.36
KRG93276	Soybean	cytosol	47.52	37.02
VIT_14s0066g01150.t01	Wine grape	cytosol	47.16	36.84
AT5G14700.1	Thale cress	cytosol	46.81	35.87
Bra008743.1-P	Field mustard	cytosol	46.81	35.87
CDY09878	Canola	cytosol	46.45	35.6
CDX69564	Canola	cytosol	46.45	35.6
Bra023481.1-P	Field mustard	cytosol	45.04	34.6
CDX85588	Canola	cytosol	45.04	34.51
CDX91029	Canola	cytosol	44.68	34.33
EER94430	Sorghum	cytosol	31.21	26.59

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	UniProt:A0A1W0VYK4	GO:GO:0003674	GO:GO:0003824
GO:GO:0003854	GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016616	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	ProteinID:OQU87209.1	ProteinID:OQU87210.1	EnsemblPlants:OQU87211
ProteinID:OQU87211	ProteinID:OQU87211.1	PFAM:PF01073	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567	EnsemblPlantsGene:SORBI_3003G233200
SUPFAM:SSF51735	UniParc:UPI0009DC8DB7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:57216419..57223614

Molecular Weight (calculated)

31406.3 Da

IEP (calculated)

7.642

GRAVY (calculated)

-0.350

Length

282 amino acids

Sequence
(BLAST)

001: MDKLREMEMF GEDGRDGVWT VMANVMDPES LHRAFDGCAG VFHTSAFVDP GGMSGYTKHM ATLEAQAAER VIEACVRTES VRKCVFTSSL LACVWRQNYP
101: HDRRCPTIID ESCWSDESFC RDNKLWFALG KTAAEKAAWR AARGRDLKLV TICPALVTGP GFRRRNSTAS IAYLKGARAM LADGLLATAN VETVAEAHVH
201: AYEAMGDNTA GGRYICYDHV VKRPEEFAEL ERQLGLPGGA TAARGSDDDR PARFELCKRK LSRLMSSRRR CTYDTYYSVA FD

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.