Factsheet for TraesCS3A01G229700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G005300.1
TraesCS1D01G021600.1
TraesCS2A01G354500.1
TraesCS2B01G374600.1
TraesCS2D01G354300.1
TraesCS3A01G517500.1
TraesCS3B01G002000.1
TraesCS3D01G525000.1
TraesCS6A01G232200.1
TraesCS6B01G249400.1
TraesCS6D01G203000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	TraesCS1B01G005300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS1D01G021600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2A01G354500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2B01G374600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2D01G354300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3A01G517500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3B01G002000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3D01G525000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6A01G232200.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6B01G249400.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6D01G203000.1	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G223500.1	Wheat	cytosol	95.94	94.91
TraesCS3B01G259000.1	Wheat	cytosol, peroxisome, plastid	95.12	94.35
HORVU3Hr1G057200.1	Barley	cytosol	93.22	91.98
OQU87211	Sorghum	cytosol	65.31	85.46
Zm00001d044104_P001	Maize	cytosol	82.93	82.26
Os01t0639200-01	Rice	cytosol	83.74	81.53
Zm00001d011446_P001	Maize	cytosol	81.57	79.0
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	72.36	73.15
KXG22093	Sorghum	cytosol	19.78	70.87
KRH56594	Soybean	cytosol	34.42	47.39
KRG93279	Soybean	cytosol	26.83	46.48
Bra008743.1-P	Field mustard	cytosol	43.63	43.75
CDX69564	Canola	cytosol	43.36	43.48
AT5G14700.1	Thale cress	cytosol	43.09	43.21
CDY09878	Canola	cytosol	43.09	43.21
KRG93276	Soybean	cytosol	42.01	42.82
VIT_14s0066g01150.t01	Wine grape	cytosol	41.46	42.38
Bra023481.1-P	Field mustard	cytosol	41.73	41.96
CDX85588	Canola	cytosol	41.73	41.85
CDX91029	Canola	cytosol	41.46	41.69
TraesCS1A01G194900.1	Wheat	cytosol	26.83	32.04

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009809	GO:GO:0009987	GO:GO:0016616	GO:GO:0019748
GO:GO:0042742	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567
SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS3A01G229700	EnsemblPlants:TraesCS3A01G229700.1	TIGR:cd08958	SEG:seg	:

Description

No Description!

Coordinates

chr3A:-:429542604..429546226

Molecular Weight (calculated)

40548.1 Da

IEP (calculated)

7.434

GRAVY (calculated)

-0.302

Length

369 amino acids

Sequence
(BLAST)

001: MGVLRSTQSM QAEVEEMRAA LFHGGGWRPS AGDSDVKRAA GGDEGAAGPR TVCVTGGISF VGFAIVDRLL RHGYTVRLAL ETQEDLDKLR EMEMFGEDGR
101: DGVWTVMANV MEPDSLHRAF DGCTGVFHTS AFVDPGGMSG YTKHMASLEA QAAERVIQAC VRTESVRKCV FTSSLLACVW RQNHPHERRG PTIVDENCWS
201: DESFCRNNKL WFALGKTAAE KAAWRAARGR DLKLVTVCPA LVTGPGFRRR NSTASIAYLK GSGVMLADGV LATANVATVA EAHVRVYEAM GDNTAGGRYI
301: CYDHVIQRAE EFAELERQLG IPSRTAAAQS VDDDDRPARF ELCKGKLGRL MASRRRCTYD DYYRPVTFQ

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.