Factsheet for TraesCS1D01G425400.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G005300.1
TraesCS1D01G021600.1
TraesCS2A01G354500.1
TraesCS2B01G374600.1
TraesCS2D01G354300.1
TraesCS3A01G517500.1
TraesCS3B01G002000.1
TraesCS3D01G525000.1
TraesCS6A01G232200.1
TraesCS6B01G249400.1
TraesCS6D01G203000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	TraesCS1B01G005300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS1D01G021600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2A01G354500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2B01G374600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2D01G354300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3A01G517500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3B01G002000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3D01G525000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6A01G232200.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6B01G249400.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6D01G203000.1	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	62.96	69.86
TraesCS1B01G447900.1	Wheat	cytosol, peroxisome, plastid	63.7	68.98
Os05t0578500-01	Rice	cytosol	58.27	62.27
TraesCS3D01G223500.1	Wheat	cytosol	52.1	56.57
GSMUA_Achr9P07010_001	Banana	cytosol	48.4	47.69
GSMUA_Achr6P27330_001	Banana	cytosol	35.31	42.56
HORVU1Hr1G091350.2	Barley	cytosol, plastid	26.42	40.07
VIT_14s0066g01150.t01	Wine grape	cytosol	32.35	36.29
KRH56594	Soybean	cytosol	23.95	36.19
KRG93276	Soybean	cytosol	31.85	35.64
Bra008743.1-P	Field mustard	cytosol	31.85	35.05
Bra023481.1-P	Field mustard	cytosol	31.6	34.88
CDY09878	Canola	cytosol	31.6	34.78
CDX85588	Canola	cytosol	31.6	34.78
CDX69564	Canola	cytosol	31.6	34.78
CDX91029	Canola	cytosol	31.11	34.33
KRG93279	Soybean	cytosol	17.78	33.8
AT5G14700.1	Thale cress	cytosol	30.62	33.7
TraesCS1D01G198500.1	Wheat	cytosol	18.77	24.68
Solyc08g005120.2.1	Tomato	plastid	0.99	1.67
PGSC0003DMT400045987	Potato	cytosol	1.98	1.52

Protein Annotations

EnsemblPlants:TraesCS1D01G425400.2	EnsemblPlantsGene:TraesCS1D01G425400	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016616
GO:GO:0055114	InterPro:3Beta_OHSteriod_DH/Estase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567	PFAM:PF01073
SEG:seg	SUPFAM:SSF51735	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1D:+:479212646..479218041

Molecular Weight (calculated)

43249.0 Da

IEP (calculated)

10.582

GRAVY (calculated)

-0.220

Length

405 amino acids

Sequence
(BLAST)

001: MGVLRSTHSM AAEVEEMRAA LLLGAGGPAW SWRRRGAAAA AKRVAGAEEG AAEARAVCVT GGISFLGLAV VDRLLRHGYA VRLALETQED LDKLREMDLF
101: GENGRDGVWT IMANVMDPES LHRAFDGCVG VFHTSSLVDP GGISGYTKHM ATLEAKAAEQ VVEACVRTES VRKCVFTSSL LACVWRQSYP HRHRFPATVD
201: ESCWSDEAFC REKKLWFALG KTMAEKAAWR AARGRDLKLV TVCPALVTGS GFRRRNSTPS IAYLKGLCLC LLSVFASSQH CPQSTDKLFG SFDENIRGAH
301: HAGGGPAGDG GRGAGGGGAR ARVRGDGRHR RRQVHLLRPC RAARRGVRGA GAPAGAPAEG AAAPGRRAAV VRALQPEAGA AGVLPEAVHP RRLPPRRVRL
401: TRPGE

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.