Factsheet for TraesCS1B01G447900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G005300.1
TraesCS1D01G021600.1
TraesCS2A01G354500.1
TraesCS2B01G374600.1
TraesCS2D01G354300.1
TraesCS3A01G517500.1
TraesCS3B01G002000.1
TraesCS3D01G525000.1
TraesCS6A01G232200.1
TraesCS6B01G249400.1
TraesCS6D01G203000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	TraesCS1B01G005300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS1D01G021600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2A01G354500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2B01G374600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2D01G354300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3A01G517500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3B01G002000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3D01G525000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6A01G232200.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6B01G249400.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6D01G203000.1	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	90.64	92.88
HORVU1Hr1G091400.1	Barley	cytosol	54.55	80.63
Os05t0578500-01	Rice	cytosol	78.88	77.84
TraesCS3B01G259000.1	Wheat	cytosol, peroxisome, plastid	72.46	72.85
TraesCS1D01G425400.2	Wheat	cytosol	68.98	63.7
KRH56594	Soybean	cytosol	33.69	47.01
KRG93279	Soybean	cytosol	26.74	46.95
GSMUA_Achr9P07010_001	Banana	cytosol	50.53	45.99
VIT_14s0066g01150.t01	Wine grape	cytosol	43.58	45.15
GSMUA_Achr6P27330_001	Banana	cytosol	39.3	43.75
KRG93276	Soybean	cytosol	42.25	43.65
Bra008743.1-P	Field mustard	cytosol	42.51	43.21
CDX69564	Canola	cytosol	42.25	42.93
CDY09878	Canola	cytosol	41.98	42.66
CDX91029	Canola	cytosol	41.44	42.23
Bra023481.1-P	Field mustard	cytosol	41.44	42.23
AT5G14700.1	Thale cress	cytosol	41.44	42.12
CDX85588	Canola	cytosol	41.44	42.12
TraesCS1B01G209700.1	Wheat	cytosol	26.47	32.25
Solyc08g005120.2.1	Tomato	plastid	1.87	2.93
PGSC0003DMT400045987	Potato	cytosol	3.21	2.28

Protein Annotations

EnsemblPlants:TraesCS1B01G447900.1	EnsemblPlantsGene:TraesCS1B01G447900	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016616
GO:GO:0055114	InterPro:3Beta_OHSteriod_DH/Estase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567	PFAM:PF01073
SEG:seg	SUPFAM:SSF51735	TIGR:cd08958	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:+:667423345..667428725

Molecular Weight (calculated)

40648.8 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.153

Length

374 amino acids

Sequence
(BLAST)

001: MGVLRSTQSM AAEVEEMRAA LLLGAGGPGP AWSWRRRGAA AAAKRGAGAE EGAAEARAVC VTGGISFLGL ALVDRLLRHG YAVRLALETQ EDLDKLREMD
101: LFGENGRDGD GVWTIMANVM DPESLHRAFD GCVGVFHTSS LVDPGGISGY TKHMATLEAK AAEQVVEACV RTESVRKCVF TSSLLACVWR QSYPHRHRFP
201: ATVDESCWSD EAFCRDKKLW FALGKTMAEK AAWRAARGRD LKLVTVCPAL VTGPGFRRRN STPSIAYLKG AHTMLAEGLL ATADVERVAE AHVRVYEAMG
301: GATAAGGRYI CYDHVVRCAE EFAQLERQLG LRPRAPPPPA AAPPSFELCN RKLARVLSSR RRCTHDAYLP VAYD

Best Arabidopsis Sequence Match ( AT5G14700.2 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGKLKTN LIMNMNPKLR NRPRIMFIVI

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.