Factsheet for PGSC0003DMT400001401

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036695

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	PGSC0003DMT400036695	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g086770.2.1	Tomato	cytosol	91.67	91.67
KRH56594	Soybean	cytosol	40.0	53.73
KRG93279	Soybean	cytosol	31.39	53.05
VIT_14s0066g01150.t01	Wine grape	cytosol	52.5	52.35
KRG93276	Soybean	cytosol	51.94	51.66
AT5G14700.1	Thale cress	cytosol	48.06	47.01
CDX91029	Canola	cytosol	47.78	46.87
Bra008743.1-P	Field mustard	cytosol	47.5	46.47
Bra023481.1-P	Field mustard	cytosol	47.22	46.32
CDX85588	Canola	cytosol	47.22	46.2
CDY09878	Canola	cytosol	47.22	46.2
CDX69564	Canola	cytosol	47.22	46.2
PGSC0003DMT400026192	Potato	cytosol	34.72	36.44
PGSC0003DMT400019823	Potato	cytosol, plastid	27.22	31.21
PGSC0003DMT400008172	Potato	cytosol	27.78	29.15
PGSC0003DMT400045216	Potato	plastid	26.11	16.76
PGSC0003DMT400045987	Potato	cytosol	2.22	1.52

Protein Annotations

EntrezGene:102593519	Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	GO:GO:0003674	GO:GO:0003824
GO:GO:0003854	GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0016491	GO:GO:0016616	GO:GO:0055114	UniProt:M0ZIE4	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073
EnsemblPlantsGene:PGSC0003DMG400000521	PGSC:PGSC0003DMG400000521	EnsemblPlants:PGSC0003DMT400001401	PANTHER:PTHR10366	PANTHER:PTHR10366:SF483	SUPFAM:SSF51735
UniParc:UPI000294B79C	RefSeq:XP_006338567.1	SEG:seg	:	:	:

Description

Cinnamoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400000521]

Coordinates

chr2:+:47101620..47104835

Molecular Weight (calculated)

40300.5 Da

IEP (calculated)

7.644

GRAVY (calculated)

-0.195

Length

360 amino acids

Sequence
(BLAST)

001: MGIVCPDESK RIEIEEFRRM LLSNAAVHRT KAGDEFQNPG KLPAANRHNR ELEEKKVCVT SGVSFLGIAI VNQLLLRGYS VRVIVEKQED LEKLREMEIS
101: GEMRQSMNTV EAVMARLNDI QSLSQAFSGC RGVFHTAAFV DPAGLSGYSK SMVEVEVLVT KNVTQACAIT PSVRNCVLTS SLVACVWQDI NSSRTIDHDC
201: WSDESICIDK KLWYALGKLK AERVAWNIAR ESGFKLATIC PGLLTGPEFI SRNPTPTIAY LKGAQEMFRN GLLATVDVNR LAVEHVLVFE DMKNTSYNRY
301: ISFDQVIRSE EELEKLARET GIDIRTTRSN SRTNSSNIVK LSNAKLCGLM STIHRCHNEF

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.