Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g052680.1.1 | Tomato | extracellular, plasma membrane | 97.33 | 96.69 |
| KRH25440 | Soybean | extracellular, plasma membrane | 32.0 | 53.33 |
| VIT_12s0059g02660.t01 | Wine grape | extracellular | 42.67 | 46.72 |
| KRH22509 | Soybean | extracellular | 42.67 | 45.07 |
| KRH26848 | Soybean | extracellular, plasma membrane | 42.0 | 44.06 |
| AT3G22070.1 | Thale cress | extracellular | 42.0 | 35.39 |
| CDY39499 | Canola | extracellular | 40.0 | 34.29 |
| CDY19306 | Canola | extracellular | 40.0 | 33.9 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067292 | EnsemblPlantsGene:PGSC0003DMG400026167 | EntrezGene:107063252 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36036 | PANTHER:PTHR36036:SF1 | PGSC:PGSC0003DMG400026167 | RefSeq:XP_015170365.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002958C71 | UniProt:M1CH13 | MapMan:35.2 | : | : | : |
Description
Lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026167]
Coordinates
chr7:-:47339241..47340152
Molecular Weight (calculated)
15680.7 Da
IEP (calculated)
6.485
GRAVY (calculated)
-0.371
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MCYVGKATKI FIFIVTVLVV TGLILGFGLL RHHNQKGENK CSGDSCDQNQ YQSPIVYPPP TTSTNTNNPI SPLPISTPSQ PNTPNPNLTP PPPPPPDNPT
101: PETPNLTPPP PPDTVVSTPP PLPPPAVSLT PPPTLSPPSP VTVSPGPVQS
101: PETPNLTPPP PPDTVVSTPP PLPPPAVSLT PPPTLSPPSP VTVSPGPVQS
001: MLCYVGKATK IFIFIVTVVF VIGLVVAFGV LRRHSHHCSG DYCSSSTDPS SSSSSSSSST SPFITPFPNP NPNPNPNPPV LGSSPPSPTD SSSSTSISPN
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND
Arabidopsis Description
Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q9LRJ8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.