CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11076
KRH21197
KRH42923
KRH42926
KRH45251
KRH56393
KRH59035
KRH59036
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22070.1	KRH11076	AT4G19030.1	21798944
AT3G22070.1	KRH21197	AT4G19030.1	21798944
AT3G22070.1	KRH42923	AT4G19030.1	21798944
AT3G22070.1	KRH42926	AT4G19030.1	21798944
AT3G22070.1	KRH45251	AT4G19030.1	21798944
AT3G22070.1	KRH59035	AT4G19030.1	21798944
AT3G22070.1	KRH59036	AT4G19030.1	21798944
AT3G22070.1	KRH56393	AT4G26455.1	21798944
AT3G22070.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22509	Soybean	extracellular	82.52	83.1
KRH25440	Soybean	extracellular, plasma membrane	40.56	64.44
VIT_12s0059g02660.t01	Wine grape	extracellular	45.45	47.45
PGSC0003DMT400067292	Potato	extracellular, plasma membrane	44.06	42.0
Solyc07g052680.1.1	Tomato	extracellular, plasma membrane	44.06	41.72
CDY19306	Canola	extracellular	46.85	37.85
CDY39499	Canola	extracellular	45.45	37.14
AT3G22070.1	Thale cress	extracellular	42.66	34.27

Protein Annotations

EMBL:ACUP02007751	EnsemblPlants:KRH26848	EnsemblPlantsGene:GLYMA_12G197200	EntrezGene:102666801	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR36036	PANTHER:PTHR36036:SF1	PRINTS:PR01217	ProteinID:KRH26848	ProteinID:KRH26848.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023D0442	UniProt:I1LU92	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr12:+:35824096..35825392

Molecular Weight (calculated)

15073.2 Da

IEP (calculated)

8.090

GRAVY (calculated)

-0.276

Length

143 amino acids

Sequence
(BLAST)

001: MCYVGKATKI FIFIVTVLVV LGLVLGLGLL RRRHHHNTAN KCSDESCIPS PTTFPNPNFN TPTPPSPIDN NPTTPQTPQL PNPIPPPPYS NNPSLPPPPP
101: ILQSPPPPEE TTPPTPPSVA APPMNTPTPG SALLTPGPVH AMA

Best Arabidopsis Sequence Match ( AT3G22070.1 )
(BLAST)

001: MLCYVGKATK IFIFIVTVVF VIGLVVAFGV LRRHSHHCSG DYCSSSTDPS SSSSSSSSST SPFITPFPNP NPNPNPNPPV LGSSPPSPTD SSSSTSISPN
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND

Arabidopsis Description

Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q9LRJ8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.