Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 | |
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G22070.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT3G22070.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25440 | Soybean | extracellular, plasma membrane | 32.85 | 50.0 |
| KRH26848 | Soybean | extracellular, plasma membrane | 47.45 | 45.45 |
| KRH22509 | Soybean | extracellular | 45.26 | 43.66 |
| PGSC0003DMT400067292 | Potato | extracellular, plasma membrane | 46.72 | 42.67 |
| Solyc07g052680.1.1 | Tomato | extracellular, plasma membrane | 45.99 | 41.72 |
| CDY39499 | Canola | extracellular | 40.15 | 31.43 |
| CDY19306 | Canola | extracellular | 40.15 | 31.07 |
| AT3G22070.1 | Thale cress | extracellular | 40.15 | 30.9 |
Protein Annotations
| ArrayExpress:VIT_12s0059g02660 | EMBL:FN595765 | EnsemblPlants:VIT_12s0059g02660.t01 | EnsemblPlantsGene:VIT_12s0059g02660 | EntrezGene:100256871 | EntrezGene:LOC100256871 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36036 | PANTHER:PTHR36036:SF1 | ProteinID:CCB52067 |
| ProteinID:CCB52067.1 | RefSeq:XP_002280993 | RefSeq:XP_002280993.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00019845FE |
| UniProt:F6HIM1 | wikigene:100256871 | wikigene:LOC100256871 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr12:-:7370986..7371658
Molecular Weight (calculated)
14167.0 Da
IEP (calculated)
8.887
GRAVY (calculated)
-0.323
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MCYVGKATKI FIFIVTVLAV TGLVIGFGLL RHSIQKTHKC SGDSCLQPPS SIYPDPSATP TPFLTPNPNP TPIPNPNPNP NPSPNPNPNP SPNPNLNPPP
101: PPPPLSPTTP PPPAQTTLAT APIYSPPALP TPGPANA
101: PPPPLSPTTP PPPAQTTLAT APIYSPPALP TPGPANA
001: MLCYVGKATK IFIFIVTVVF VIGLVVAFGV LRRHSHHCSG DYCSSSTDPS SSSSSSSSST SPFITPFPNP NPNPNPNPPV LGSSPPSPTD SSSSTSISPN
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND
Arabidopsis Description
Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q9LRJ8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.