Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19306 | Canola | extracellular | 96.0 | 94.92 |
| AT3G22070.1 | Thale cress | extracellular | 74.86 | 73.6 |
| KRH25440 | Soybean | extracellular, plasma membrane | 27.43 | 53.33 |
| KRH22509 | Soybean | extracellular | 37.14 | 45.77 |
| KRH26848 | Soybean | extracellular, plasma membrane | 37.14 | 45.45 |
| VIT_12s0059g02660.t01 | Wine grape | extracellular | 31.43 | 40.15 |
| PGSC0003DMT400067292 | Potato | extracellular, plasma membrane | 34.29 | 40.0 |
| Solyc07g052680.1.1 | Tomato | extracellular, plasma membrane | 33.71 | 39.07 |
Protein Annotations
| EnsemblPlants:CDY39499 | EnsemblPlantsGene:GSBRNA2T00068009001 | GO:A0A078HQ65 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36036 | PANTHER:PTHR36036:SF1 | ProteinID:CDY39499 | ProteinID:CDY39499.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0004EEB1D7 | UniProt:A0A078HQ65 | MapMan:35.2 | : | : | : |
Description
BnaA01g24890DBnaA01g24890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HQ65]
Coordinates
chrLK032449:-:197685..198375
Molecular Weight (calculated)
17783.9 Da
IEP (calculated)
6.213
GRAVY (calculated)
-0.251
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCYVGKATK IFIFIVTVVV VIGLVVGLGV FRRHSHHCSG DYCSSPTDSS SSSSASPFIT PFPNPTPNPN PPVLGSSPPA PPGSSSPNPS LPTTPTPPAP
101: IVNPNSPPPP SNLNPPPQFS PPPPDSDTTA APPPPASQSS MPPPPPAEES ASPPLNPPSS VVNTPAPVYA KLVND
101: IVNPNSPPPP SNLNPPPQFS PPPPDSDTTA APPPPASQSS MPPPPPAEES ASPPLNPPSS VVNTPAPVYA KLVND
001: MLCYVGKATK IFIFIVTVVF VIGLVVAFGV LRRHSHHCSG DYCSSSTDPS SSSSSSSSST SPFITPFPNP NPNPNPNPPV LGSSPPSPTD SSSSTSISPN
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND
101: PPAPIVNPNP PPPSTPNPPP EFSPPPPDLD TTTAPPPPST DIPIPPPPPA PVSASPPLTP PSSVVTSPAP VHAKLVND
Arabidopsis Description
Proline-rich family protein [Source:UniProtKB/TrEMBL;Acc:Q9LRJ8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.