Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- plasma membrane 1
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g078060.2.1 | Tomato | plastid | 86.67 | 89.31 |
| KRH77313 | Soybean | mitochondrion | 25.19 | 40.96 |
| VIT_00s0533g00010.t01 | Wine grape | cytosol | 39.26 | 39.55 |
| Bra023021.1-P | Field mustard | cytosol, golgi, mitochondrion, plastid | 25.93 | 39.33 |
| CDX79615 | Canola | plastid | 26.67 | 38.3 |
| AT4G16840.1 | Thale cress | mitochondrion | 24.44 | 37.93 |
| Bra021076.1-P | Field mustard | plastid | 26.67 | 36.73 |
| CDX76585 | Canola | plastid | 26.67 | 36.73 |
| CDY43473 | Canola | plastid | 26.67 | 36.73 |
| AT2G35658.2 | Thale cress | plastid | 27.41 | 35.58 |
| CDX84606 | Canola | cytosol, golgi, plasma membrane, plastid | 26.67 | 29.27 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400067520 | EnsemblPlantsGene:PGSC0003DMG400026255 | EntrezGene:102595591 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR34189 | PANTHER:PTHR34189:SF2 | PGSC:PGSC0003DMG400026255 | RefSeq:XP_006359226.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295EBF1 | UniProt:M1CHF7 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026255]
Coordinates
chr8:-:51192833..51194471
Molecular Weight (calculated)
14830.3 Da
IEP (calculated)
4.917
GRAVY (calculated)
-0.379
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRSSSSSRV SEEFFFNSSP NLKSTISTET EELPTFNPQS QVAKKERNRL RSAENAIHLI PLILLLSAIV LWVFSSPAVP MVNKADSIVA RLNIAVNQPG
101: INGDSSKRSF TSKIESEDID ATDKSIGQEN NEADG
101: INGDSSKRSF TSKIESEDID ATDKSIGQEN NEADG
001: MYRSASWNRV PEDYSSAPPK GLWMGSVIGP LDENELPSYN NPPEEMVKKE KSRAKFAENA IHIIPFVLLA CALVLWLFSN PDVDVGMREE SIAAKIEGLT
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDG7]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.