Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- golgi 1
- plastid 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79615 | Canola | plastid | 70.73 | 92.55 |
| Bra023021.1-P | Field mustard | cytosol, golgi, mitochondrion, plastid | 64.23 | 88.76 |
| AT2G35658.2 | Thale cress | plastid | 51.22 | 60.58 |
| CDX76585 | Canola | plastid | 39.02 | 48.98 |
| CDY43473 | Canola | plastid | 39.02 | 48.98 |
| KRH77313 | Soybean | mitochondrion | 23.58 | 34.94 |
| VIT_00s0533g00010.t01 | Wine grape | cytosol | 30.89 | 28.36 |
| Solyc08g078060.2.1 | Tomato | plastid | 29.27 | 27.48 |
| PGSC0003DMT400067520 | Potato | plastid | 29.27 | 26.67 |
| CDY02126 | Canola | cytosol, plasma membrane, plastid | 27.64 | 23.13 |
| CDY23048 | Canola | cytosol | 27.64 | 22.97 |
| CDX78297 | Canola | cytosol | 27.64 | 22.67 |
| CDY42867 | Canola | cytosol, plasma membrane, plastid | 24.39 | 20.0 |
| CDY68478 | Canola | cytosol, plasma membrane, plastid | 24.39 | 20.0 |
Protein Annotations
| EnsemblPlants:CDX84606 | EnsemblPlantsGene:GSBRNA2T00141870001 | GO:A0A078D5K8 | PANTHER:PTHR34189 | PANTHER:PTHR34189:SF2 | ProteinID:CDX84606 |
| ProteinID:CDX84606.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDC35B | MapMan:35.2 | : |
Description
BnaA03g16240D
Coordinates
chrLK031838:+:298100..298925
Molecular Weight (calculated)
13913.0 Da
IEP (calculated)
8.716
GRAVY (calculated)
0.063
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRSASASIV SDQLSAKAPS PSPSPPRIQS DTDSEDVQLL LPRYDPNSYP GKKDKTRLRS AENAIHFIPL ILIICALILC SSNDQTVNMV VERVFDHLMG
101: KPSTILHLYY FFFLKIFLLV PFF
101: KPSTILHLYY FFFLKIFLLV PFF
001: MRRSASASIV SDQLSANSPS PSPSPPRIKT SADSDDSHLL LPRYDPNSHP GKKNKSRFRS AENAIHFIPI VLILCAVILW MFSNPGNQIQ FLGDKSSVHV
101: RESL
101: RESL
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 /.../ins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G35658]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.