Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plasma membrane 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23048 | Canola | cytosol | 100.0 | 99.32 |
| Bra012935.1-P | Field mustard | cytosol | 79.59 | 99.15 |
| AT5G61630.1 | Thale cress | cytosol, plasma membrane, plastid | 90.48 | 90.48 |
| CDY42867 | Canola | cytosol, plasma membrane, plastid | 91.84 | 90.0 |
| CDY68478 | Canola | cytosol, plasma membrane, plastid | 91.84 | 90.0 |
| CDX78297 | Canola | cytosol | 64.63 | 63.33 |
| VIT_16s0013g00500.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 44.9 | 44.59 |
| KRG92188 | Soybean | cytosol, mitochondrion, plasma membrane, plastid | 41.5 | 42.96 |
| KRH34600 | Soybean | cytosol | 41.5 | 42.96 |
| Solyc05g052080.1.1 | Tomato | plastid | 38.1 | 37.09 |
| CDX79615 | Canola | plastid | 20.41 | 31.91 |
| CDX76585 | Canola | plastid | 20.41 | 30.61 |
| CDY43473 | Canola | plastid | 20.41 | 30.61 |
| CDX84606 | Canola | cytosol, golgi, plasma membrane, plastid | 23.13 | 27.64 |
Protein Annotations
| EnsemblPlants:CDY02126 | EnsemblPlantsGene:GSBRNA2T00113518001 | GO:A0A078ELR2 | PANTHER:PTHR34189 | PANTHER:PTHR34189:SF4 | ProteinID:CDY02126 |
| ProteinID:CDY02126.1 | TMHMM:TMhelix | UniParc:UPI0004EE0122 | MapMan:35.2 | : | : |
Description
BnaA03g40410D
Coordinates
chrLK031932:+:267920..268884
Molecular Weight (calculated)
16284.2 Da
IEP (calculated)
4.702
GRAVY (calculated)
-0.480
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRSASWNRG TEDYSSAPPK GLWMGSMIGS LDDDELPSYN NPPEEMIKKE KSRAKFAENA IHIIPFVLLA CALVLWLFSN PDVDVGMREE SIAARIEGLT
101: IEGDIDNDSD GTQTGFLGAT LELGGDSDKP HHVDRNRRAS RKLIKGF
101: IEGDIDNDSD GTQTGFLGAT LELGGDSDKP HHVDRNRRAS RKLIKGF
001: MYRSASWNRV PEDYSSAPPK GLWMGSVIGP LDENELPSYN NPPEEMVKKE KSRAKFAENA IHIIPFVLLA CALVLWLFSN PDVDVGMREE SIAAKIEGLT
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDG7]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.