Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- plasma membrane 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23048 | Canola | cytosol | 91.16 | 90.54 |
| CDY02126 | Canola | cytosol, plasma membrane, plastid | 90.48 | 90.48 |
| Bra029321.1-P | Field mustard | cytosol, plasma membrane, plastid | 89.8 | 88.0 |
| CDY42867 | Canola | cytosol, plasma membrane, plastid | 89.8 | 88.0 |
| CDY68478 | Canola | cytosol, plasma membrane, plastid | 89.8 | 88.0 |
| Bra012935.1-P | Field mustard | cytosol | 70.07 | 87.29 |
| AT5G07490.1 | Thale cress | cytosol | 64.63 | 63.76 |
| VIT_16s0013g00500.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 44.9 | 44.59 |
| KRG92188 | Soybean | cytosol, mitochondrion, plasma membrane, plastid | 41.5 | 42.96 |
| KRH34600 | Soybean | cytosol | 41.5 | 42.96 |
| Solyc05g052080.1.1 | Tomato | plastid | 38.1 | 37.09 |
| AT4G16840.1 | Thale cress | mitochondrion | 20.41 | 34.48 |
| AT2G35658.2 | Thale cress | plastid | 23.81 | 33.65 |
Protein Annotations
| ArrayExpress:AT5G61630 | EMBL:DQ447101 | EnsemblPlants:AT5G61630.1 | EnsemblPlantsGene:AT5G61630 | EntrezGene:836285 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34189 | PANTHER:PTHR34189:SF4 | ProteinID:AED97499.1 |
| ProteinID:OAO91854.1 | RefSeq:AT5G61630 | RefSeq:AT5G61630-TAIR-G | RefSeq:NP_200971.1 | TAIR:AT5G61630 | TAIR:AT5G61630.1 |
| TMHMM:TMhelix | UniParc:UPI0000162906 | UniProt:A0A178UF08 | UniProt:Q1PDG7 | MapMan:35.2 | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDG7]
Coordinates
chr5:-:24773229..24774578
Molecular Weight (calculated)
16329.4 Da
IEP (calculated)
4.577
GRAVY (calculated)
-0.423
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRSASWNRV PEDYSSAPPK GLWMGSVIGP LDENELPSYN NPPEEMVKKE KSRAKFAENA IHIIPFVLLA CALVLWLFSN PDVDVGMREE SIAAKIEGLT
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.