Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005942.1-P | Field mustard | cytosol | 86.58 | 86.0 |
| CDX78297 | Canola | cytosol | 86.58 | 86.0 |
| AT5G61630.1 | Thale cress | cytosol, plasma membrane, plastid | 63.76 | 64.63 |
| VIT_16s0013g00500.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 46.31 | 46.62 |
| KRG92188 | Soybean | cytosol, mitochondrion, plasma membrane, plastid | 42.28 | 44.37 |
| KRH34600 | Soybean | cytosol | 42.28 | 44.37 |
| Solyc05g052080.1.1 | Tomato | plastid | 38.93 | 38.41 |
| AT2G35658.2 | Thale cress | plastid | 22.82 | 32.69 |
| AT4G16840.1 | Thale cress | mitochondrion | 18.79 | 32.18 |
Protein Annotations
| ArrayExpress:AT5G07490 | EMBL:DQ446926 | EnsemblPlants:AT5G07490.1 | EnsemblPlantsGene:AT5G07490 | EntrezGene:830641 | GO:GO:0005575 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34189 | PANTHER:PTHR34189:SF4 | ProteinID:AED91165.1 |
| ProteinID:OAO93392.1 | RefSeq:AT5G07490 | RefSeq:AT5G07490-TAIR-G | RefSeq:NP_196366.2 | TAIR:AT5G07490 | TAIR:AT5G07490.1 |
| TMHMM:TMhelix | UniParc:UPI0000D5BD06 | UniProt:A0A178UK21 | UniProt:Q1PDZ2 | MapMan:35.2 | : |
Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDZ2]
Coordinates
chr5:+:2370133..2371326
Molecular Weight (calculated)
16652.6 Da
IEP (calculated)
8.444
GRAVY (calculated)
-0.593
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRSASWNRV TEDYSVPWSA PKGLWKGLDE DEPAPYDPTG QEMTKKEKSR TKFAENAVHI IPFVLLACAL VLWFFSNPDV DVGVKGDSIA ARIEGLTIEG
101: DIDNDSDGTQ TGFLGAATEV GHSKNKLKRE ANKRNRRIQA SRKVMKGFY
101: DIDNDSDGTQ TGFLGAATEV GHSKNKLKRE ANKRNRRIQA SRKVMKGFY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.