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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 2
  • endoplasmic reticulum 1
  • plasma membrane 1
  • nucleus 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, mitochondrion, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus, plasma membrane
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G07490.1 Thale cress cytosol 38.41 38.93
VIT_16s0013g00500.t01 Wine grape cytosol, peroxisome, plasma membrane 37.75 38.51
AT5G61630.1 Thale cress cytosol, plasma membrane, plastid 37.09 38.1
CDY02126 Canola cytosol, plasma membrane, plastid 37.09 38.1
Bra005942.1-P Field mustard cytosol 37.75 38.0
CDX78297 Canola cytosol 37.75 38.0
CDY23048 Canola cytosol 37.09 37.84
Bra029321.1-P Field mustard cytosol, plasma membrane, plastid 35.1 35.33
CDY42867 Canola cytosol, plasma membrane, plastid 35.1 35.33
CDY68478 Canola cytosol, plasma membrane, plastid 35.1 35.33
KRG92188 Soybean cytosol, mitochondrion, plasma membrane, plastid 32.45 34.51
KRH34600 Soybean cytosol 32.45 34.51
Solyc08g078060.2.1 Tomato plastid 27.15 31.3
Bra012935.1-P Field mustard cytosol 21.85 27.97
Protein Annotations
EnsemblPlants:Solyc05g052080.1.1EnsemblPlantsGene:Solyc05g052080.1GO:GO:0005575GO:GO:0016020GO:GO:0016021PANTHER:PTHR34189
PANTHER:PTHR34189:SF4SEG:segTMHMM:TMhelixUniParc:UPI0002765B09UniProt:K4C1N9MapMan:35.2
Description
No Description!
Coordinates
chr5:-:62415096..62415659
Molecular Weight (calculated)
16604.6 Da
IEP (calculated)
6.258
GRAVY (calculated)
-0.295
Length
151 amino acids
Sequence
(BLAST)
001: MYRSSSATRV SDDYNFTSYY SSSSNSSSSL TKVSPALRAL SLEASELLPI HEPLSNISKK EKSRAKFAEN AVHIIPFVLL LCGFILWFLS NPDIDTPILK
101: GEGIATRIEG LTIEGDLDPP DGTHVTNLPL ESRDVDLIKQ GQSRQKSYTG K
Best Arabidopsis Sequence Match ( AT5G07490.1 )
(BLAST)
001: MYRSASWNRV TEDYSVPWSA PKGLWKGLDE DEPAPYDPTG QEMTKKEKSR TKFAENAVHI IPFVLLACAL VLWFFSNPDV DVGVKGDSIA ARIEGLTIEG
101: DIDNDSDGTQ TGFLGAATEV GHSKNKLKRE ANKRNRRIQA SRKVMKGFY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDZ2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.