Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- mitochondrion 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400067520 | Potato | plastid | 89.31 | 86.67 |
| VIT_00s0533g00010.t01 | Wine grape | cytosol | 43.51 | 42.54 |
| KRH77313 | Soybean | mitochondrion | 26.72 | 42.17 |
| CDX79615 | Canola | plastid | 28.24 | 39.36 |
| Bra023021.1-P | Field mustard | cytosol, golgi, mitochondrion, plastid | 25.95 | 38.2 |
| AT2G35658.2 | Thale cress | plastid | 29.77 | 37.5 |
| AT4G16840.1 | Thale cress | mitochondrion | 24.43 | 36.78 |
| Bra021076.1-P | Field mustard | plastid | 25.95 | 34.69 |
| CDX76585 | Canola | plastid | 25.95 | 34.69 |
| CDY43473 | Canola | plastid | 25.95 | 34.69 |
| CDX84606 | Canola | cytosol, golgi, plasma membrane, plastid | 27.48 | 29.27 |
| Solyc05g052080.1.1 | Tomato | plastid | 31.3 | 27.15 |
Protein Annotations
| EnsemblPlants:Solyc08g078060.2.1 | EnsemblPlantsGene:Solyc08g078060.2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34189 |
| PANTHER:PTHR34189:SF2 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276C8B2 | UniProt:K4CNG5 | MapMan:35.2 |
Description
No Description!
Coordinates
chr8:-:61912277..61914286
Molecular Weight (calculated)
14585.0 Da
IEP (calculated)
4.772
GRAVY (calculated)
-0.367
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRSSSSSRV SEEFFFNSSP NLKSTISTET EELPTFNPQS HVAKKERNRL RSAENAIHLI PLILLLSAIV LWVFSSPAVT MVNKADSIVA RLNVAVNQPE
101: IHEDSSKTSF TSKLELEDID ATDKSEDQSE G
101: IHEDSSKTSF TSKLELEDID ATDKSEDQSE G
001: MYRSASWNRV PEDYSSAPPK GLWMGSVIGP LDENELPSYN NPPEEMVKKE KSRAKFAENA IHIIPFVLLA CALVLWLFSN PDVDVGMREE SIAAKIEGLT
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDG7]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.